Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g02652 ATGGAAGAAGAACAGGATCGAATTTTGCTTACTACTTTAGGCGTTAAATCCGCCAATCCTGAAGATATCGAACGCCACGTTCTCGAAAAGGCTACTAGGAATGATTCAGTTACAGTTACTGAAGCTGAAGGGAACACTGATGAAAAAGAAGGTTCTAGTTTACCTGAAAATGTTGATCCGTTAGTTACTGCAAAAGCTGAACTTCATCAGAAGTTGAGAGCGATAGAATTTGAAATTGGCGCAGTTTCTTCGACTATTCAACTGCCGAGAGATGTTGATAAGGGTGAAGAAAATGGTGATGTTGGTGAGGATAATGAGAATGTGGAGGAAGGGATTGGTGAGGGTGTTGGTTCGGAGCTTCACCGTGCTCTGGCTGCTGATAGGTTGAGAAGTTTGAAGAATACAAAGGCTCAATTGGAGAAAGAGCTTTCGAGATTTTCAAAAGATGGTGATTCGAAAAGTACCGAACGTAGAAAAGTTATCTTTAGTTTAGTTAAGGAGGATCGAAGACCAAAGAAGAAGCTTAAAGATGATAAGAAATTAAGTAAAAGACCTGTGAAGCGGTTTAAGACGGTTTCGTTTGATGATGATGCTGATTTTGATGCTGTTCTGGATGCAGCCTCTGCGGGCTTTGTAGAAACTGAAAGGGATGAATTGGTCAGAAAAGGAATTTTAACTCCTTTTCATAAGTTGAAGGGCTTTGAGCGCAGCGTTCAACAACCTCAAGCATCAACTAGTCGTAATGCAGCTGAGCAAGAAAATACCGAAGATCGTGTTTTGCCCAGTGTTGAGAGAGCTGCCAGATCATTTTCTCAGGCAGCAAGAGCTCGCCCAACCTCCAAGCTGCTTCAGCCTGAAGAGTTACCGAAGCTTGATGCACCCACTATTCCTTTTCGCAGGCTCAAAAAACCACTACAATTACCCCAACCTATAGACAGTGACGAGGATCTGAATACAGattcaaaaaggaaaaagaagcgACCTTTGCCTGGTAGGAAATGGACCAAGCGTATTTCTTCCGAGGATAGAAAACTGGAAGAAAGTGAAAATGCAAATGGTTGCTTGGACACTTCCAGTTGTGAAAGTTTAGAAGGGCATGATGTTGAACTTTCTGAACATGAATCTTATGTAACATTAGAAGGTGGATTGAATATCCCTGATAACATATTTAAAGCTCTGTTTGACTATCAAAAGGTTGGTGTTCAATGGCTGTGGGAGTTGCACTGCCAAAATACTGGTGGAATTATTGGTGATGAGATGGGTCTTGGTAAAACTATACAAGTGTTATCATTTCTTGCTGCATTGCATTTTAGTGGCATGTATAAACCCAGCATTATTGTCTGTCCTGTTACACTCTTGCGACAGTGGAAAAGGGAAGCTAAAAAGTGGTATCCTAAATTCCATGTAGAAGTTTTACATGATTCTGCTCAGGATCTGGCTTCTAAAAAGAAGCGAGCTGAATCCGATGGAACAGACTCTGAAAGCAATAGTTCAAGCGACAATGATTATGAGAGTAGAGTACCGTctaaaaacacaagaaaatggGAAACCCTGGTAAATCGTGTCATGAGATCAGAATCTGGATTACTCATTACCACTTATGAGCAGCTAAGGATATTGGGGGACCAGTTGCTTCACATTGAATGGGGCTATGCTGTTCTTGATGAAGGGCATAAAATAAGGAATCCAAATGCAGAAGTTACATTAGCTTGCAAACAGCTAAAAACTATACACCGCATCATAATGACTGGTGCACCTATTCAGAACAAACTGAGTGAGTTATGGTcgttatttgattttgttttcccTGGAAAATTGGGTGTTTTGCCTGTATTTGAAGCTGAGTTTGCAGTTCCTATAGCAGTTGGCGGATATTCAAATGCTTCTCCATTACAAGTATCCACAGCATACAGGTGTGCTGTCATGCTGCGTGATTTAATTATGCCTTATCTTCTCCGACGAATGAAGGCTGATGTAAATGCCCAACTTCCAAATAAAACTGAGCATGTTCTGTTTTGCAGCCTTACATCAGAGCAAGTATCTGCTTATAGAGCATTTTTAGCAAGCACTGAAGTGGAGGAAATATTGGATGGAGGCAGAAATTCGCTTTATGGAATTGATGTGATGCGCAAGATCTGCAACCATCCAGACCTACTTGAAAGGGAACATGCCTTCAGCAATCCAGATTATGGAAATCCAGAACGTAGTGGGAaaatgaaagttgtagctcaaGTGCTTAATGTTTGGAAGGAGCAAGGCCATCGTGTTCTTCTTTTTACTCAAACCCAACAAATGCTTGACATTTTTGAGAAATATTTGACCACTTCTGGTCATATTTACCGGAGAATGGATGGTCTCACTCCTGTAAAACAGAGAATGGCTTTAATGGATGAATTTAATGCCTCGATtgagatttttgttttcattttaacAACCAAAGTAGGTGGGTTGGGGACAAATCTTACTGGTGCAGATAGAGTGATCATCTTTGACCCTGATTGGAATCCTTCAACTGATATGCAGGCTAGAGAGCGTGCATGGCGAATTGGTCAGAAACGGGATGTCACAATATATAGGTTAATCACTCGTGGAACTATAGAGGAGAAAGTGTATCATCGTCAGATTTACAAACATTTTCTTACCAATAAGATCTTGAAGAACCCACAGCAGAAAAGGTTCTTTAAAGCCCGAGATATGAAGGACCTTTTTGTATTGAATGTGGATGGAGAAACTGGCTCAACAGaaacatcaaatattttcagCCAAATATCTGAAGACGTAAATATTACCGGGACACATCAAGATAACCAGGATAAGAATGAATATAGTCAAACTGCTGAACTGGGTTCTGATGCTGTTGCAGTTGATAATTGTTCAAAATCACACACAAGATCTTCAAGaggaaaagggaaagaaaaggTTGATCAAAGTAATGGGGTTGATGCAGAAGCGGATATATTGAAAAGTCTTTTTGATGCTAATGGGATACATNTACTGGGACACATCAAGATAACCAGGATAAGAATGAATATAAGTGCCATGAACCATGATTTGATCATGAATGCCAATGATGAGGAGAAGATGAGACTTGATGAGCAAGCTTCCCAGGTTGCACAAAGAGCTGCAGAAGCTTTACGTCAGTCACGAATGATCCGAAGCCATGAAAGCGTCTCTGTTCCTACATGGACAGGAAGGTCGGGAACTGCTGGTGCACCATCATCTGTTCGGAGGAAGTTTGGTTCAACTGTGAAACCCCAGTTGCTAAACAATAGCAAAACATCTGATGAATTACCAAGCAGCGGATCTAACAAATTCAATGGATATGCTGCTGGGGTATCTTCTGGTAAGGCATTATCTTCTGCTGAAATATTATCTAAAATTCAAGGTAATCAAGAAAAAGCCATCAGTGCCGGGCTTGAGCATCAGTTTGGTATGTCGTCAAGTTCCACAAATCAGTCAAGATCTATAGGCGTTAAAACTACAAGGGCTCCGGAAAATTCACCTGGATTCCAACCTGAAGTAATGATCCGGAAAATCTGTACCTTTTTCGAACAGAAAGGTGGCAGGTGTAGTTCAGGCAGCATAGTTCAGCATTTCAAGGACAGGATCCCCTCAAAAGATCTTGCCCTGTTCAAGAATATGTTAAAGGAAATAGCAATGCTGCAGAAAGGATCTAATGGTTCCCATTGGGTTCTGAAGCCAGACTATCGAGAATAG 3717 0.3968 MEEEQDRILLTTLGVKSANPEDIERHVLEKATRNDSVTVTEAEGNTDEKEGSSLPENVDPLVTAKAELHQKLRAIEFEIGAVSSTIQLPRDVDKGEENGDVGEDNENVEEGIGEGVGSELHRALAADRLRSLKNTKAQLEKELSRFSKDGDSKSTERRKVIFSLVKEDRRPKKKLKDDKKLSKRPVKRFKTVSFDDDADFDAVLDAASAGFVETERDELVRKGILTPFHKLKGFERSVQQPQASTSRNAAEQENTEDRVLPSVERAARSFSQAARARPTSKLLQPEELPKLDAPTIPFRRLKKPLQLPQPIDSDEDLNTDSKRKKKRPLPGRKWTKRISSEDRKLEESENANGCLDTSSCESLEGHDVELSEHESYVTLEGGLNIPDNIFKALFDYQKVGVQWLWELHCQNTGGIIGDEMGLGKTIQVLSFLAALHFSGMYKPSIIVCPVTLLRQWKREAKKWYPKFHVEVLHDSAQDLASKKKRAESDGTDSESNSSSDNDYESRVPSKNTRKWETLVNRVMRSESGLLITTYEQLRILGDQLLHIEWGYAVLDEGHKIRNPNAEVTLACKQLKTIHRIIMTGAPIQNKLSELWSLFDFVFPGKLGVLPVFEAEFAVPIAVGGYSNASPLQVSTAYRCAVMLRDLIMPYLLRRMKADVNAQLPNKTEHVLFCSLTSEQVSAYRAFLASTEVEEILDGGRNSLYGIDVMRKICNHPDLLEREHAFSNPDYGNPERSGKMKVVAQVLNVWKEQGHRVLLFTQTQQMLDIFEKYLTTSGHIYRRMDGLTPVKQRMALMDEFNASIEIFVFILTTKVGGLGTNLTGADRVIIFDPDWNPSTDMQARERAWRIGQKRDVTIYRLITRGTIEEKVYHRQIYKHFLTNKILKNPQQKRFFKARDMKDLFVLNVDGETGSTETSNIFSQISEDVNITGTHQDNQDKNEYSQTAELGSDAVAVDNCSKSHTRSSRGKGKEKVDQSNGVDAEADILKSLFDANGIHXLGHIKITRIRMNISAMNHDLIMNANDEEKMRLDEQASQVAQRAAEALRQSRMIRSHESVSVPTWTGRSGTAGAPSSVRRKFGSTVKPQLLNNSKTSDELPSSGSNKFNGYAAGVSSGKALSSAEILSKIQGNQEKAISAGLEHQFGMSSSSTNQSRSIGVKTTRAPENSPGFQPEVMIRKICTFFEQKGGRCSSGSIVQHFKDRIPSKDLALFKNMLKEIAMLQKGSNGSHWVLKPDYRE 1238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g02652 1238 MobiDBLite consensus disorder prediction 480 507 - -
Tsu01g02652 1238 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 741 900 IPR001650 -
Tsu01g02652 1238 MobiDBLite consensus disorder prediction 235 341 - -
Tsu01g02652 1238 MobiDBLite consensus disorder prediction 1060 1105 - -
Tsu01g02652 1238 SMART ultradead3 389 612 IPR014001 -
Tsu01g02652 1238 Coils Coil 1027 1047 - -
Tsu01g02652 1238 Pfam SNF2-related domain 396 718 IPR000330 GO:0005524|GO:0140658
Tsu01g02652 1238 Gene3D - 660 952 IPR027417 -
Tsu01g02652 1238 Coils Coil 122 149 - -
Tsu01g02652 1238 CDD SF2_C_SNF 736 861 - -
Tsu01g02652 1238 PANTHER SNF2/RAD54 FAMILY MEMBER 251 1135 - -
Tsu01g02652 1238 MobiDBLite consensus disorder prediction 29 56 - -
Tsu01g02652 1238 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 405 604 IPR014001 -
Tsu01g02652 1238 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 656 910 IPR027417 -
Tsu01g02652 1238 Pfam Helicase conserved C-terminal domain 743 850 IPR001650 -
Tsu01g02652 1238 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 374 654 IPR027417 -
Tsu01g02652 1238 MobiDBLite consensus disorder prediction 1079 1105 - -
Tsu01g02652 1238 PANTHER DNA EXCISION REPAIR PROTEIN ERCC-6-RELATED 251 1135 - -
Tsu01g02652 1238 CDD DEXHc_ERCC6 393 603 - -
Tsu01g02652 1238 Gene3D - 366 653 IPR038718 -
Tsu01g02652 1238 SMART helicmild6 767 850 IPR001650 -
Tsu01g02652 1238 MobiDBLite consensus disorder prediction 88 111 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g02652 Tsu-Chr1 29842651 29849515 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g02652 386 903 RAD5 or RAD16-like Gene Family AT1G02670 22.857 2.57e-23 104
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Tsu01g02652 SNF2_N 2.2e-62 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g02652 K10841 - gmx:100820025 1870.9
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g02652 01 29842651 29849515 Tsu01g02652 01 29842651 29849515 ECH