Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g02647 ATGGATTCTGCTAGGAGTTGGCTTCAGAAGTTGCAGCCTCGTGATAAAATGAAGGCAAAGaagagagatgaagatggtAATAATGATGGAGATGGGGATGGAGATTTGACATCACCTGTGGACGAAGCGTTGCTTTCTGATGTCACGAAACAGAAGGTTGCCGCGGCAAAACAGTATATTGAAAATCATTACAAGGAGCAAATGAAGAACCTTCAGGAGAGGAAGGAGCGTCGAACCATCTTGGAAAAGAAGTTGGCTGATGCCGAGGTCTCTGAAGAGGATCAAAGCAACTTGATTaagtttttagagagaaagGAAACCGAATATATGCGCCTTCAGAGGGCCAAGATGGGTGTTGATGATTTTGAGTTATTAACTATGATTGGCAAAGGTGCATTTGGAGAGGTCAGGGTCTGCAAAGAGAAGACTACCGATCATGTATACGCAATGAAAAAACTAAAGAAATCAGAGATGCTTCGCAGAGGCCAGGTTGAACACGTCAAAGCGGAAAGGAATCTCCTCGCAGAGGTTGACAGCAATTGCATAGTCAAACTTTACTATTCTTTCCAGGATGAAGAGTATCTTTATCTTATTATGGAGTATCTACCGGGTGGAGATATGATGACTCTACTTATGAGAAAGGATACCTTGACTGAAGATGAAGCCAGATTTTATGTTGGTGAAACTGTTCTGGCTATTGAATCTATACACGAGCACAATTATATACACAGGGATATCAAGCCTGACAACTTATTACTTGATAGATATGGACACTTGAGACTGTCTGACTTTGGACTTTGTAAACCATTAGATTGTAGTCAGCTTGAAGAAAAGGATTTTTCTATCGGTCAGAATGCGAATGGATCTACACATAATGAGGCCAGTTCAACTCCAAAACGCACACAGCAAGAACAACTGCAAAACTGGCAAAAGAACAGGAGGACACTTGCTTATTCCACAGTTGGTACACCAGATTATATTGCTCCAGAAGTTCTTTTGAAGAAAGGGTATGGGATGGAATGTGATTGGTGGTCACTCGGTGCTATCATGTATGAAATGTTGGTGGGATATCCACCTTTTTATTCTGATGATCCAATGACAACATGTAGGAAGATCGTGAACTGGAAATCTCACTTGAAATTTCCTGAGGAAGCTGCGCTATCGCCAGAGGCTAAAGATCTTATTAGTAGACTTTTATGTAATGTCAATCATAGGCTGGGATCAAACGGTGCTGATGAAATAAAGGCTCATCCGTTCTTCAATGGTGTTGAATGGGATAAACTATATCATATTGAAGCTGCATTTATGCCTGAGGTCAATGATGAATTAGATACTCAGAATTTTGAAAAGTTCGATGAGGCTGACTTTGAAACTCGACCGTCATCAAAAGCTGGTCCATGGAGGAAGATGATTTCATCTAAAGACTTAAATTTTGTTGGATACACATACAAGAACTTTGAAATTGTCAGCGATTATCAAGTTCCTGGGATGGCTGAACTGAAGAAGAAACCCTCCAAATCAAAGAGACCATCCATTAAATCGCTTTTTGATTCCGATTCAGAGGTGTGTGAGGTTTCTGATACATCTGCAAGTGATCAACCTGCTCAAGGAAGCTTTTTAAACCTCTTGCCACCCAAGTTAGAGCCATCTCATAGCGAGAGGAATCTTACTCATAAGTCCTAA 1683 0.4005 MDSARSWLQKLQPRDKMKAKKRDEDGNNDGDGDGDLTSPVDEALLSDVTKQKVAAAKQYIENHYKEQMKNLQERKERRTILEKKLADAEVSEEDQSNLIKFLERKETEYMRLQRAKMGVDDFELLTMIGKGAFGEVRVCKEKTTDHVYAMKKLKKSEMLRRGQVEHVKAERNLLAEVDSNCIVKLYYSFQDEEYLYLIMEYLPGGDMMTLLMRKDTLTEDEARFYVGETVLAIESIHEHNYIHRDIKPDNLLLDRYGHLRLSDFGLCKPLDCSQLEEKDFSIGQNANGSTHNEASSTPKRTQQEQLQNWQKNRRTLAYSTVGTPDYIAPEVLLKKGYGMECDWWSLGAIMYEMLVGYPPFYSDDPMTTCRKIVNWKSHLKFPEEAALSPEAKDLISRLLCNVNHRLGSNGADEIKAHPFFNGVEWDKLYHIEAAFMPEVNDELDTQNFEKFDEADFETRPSSKAGPWRKMISSKDLNFVGYTYKNFEIVSDYQVPGMAELKKKPSKSKRPSIKSLFDSDSEVCEVSDTSASDQPAQGSFLNLLPPKLEPSHSERNLTHKS 560
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g02647 560 ProSiteProfiles AGC-kinase C-terminal domain profile. 421 493 IPR000961 GO:0004674|GO:0005524|GO:0006468
Tsu01g02647 560 SMART pkinase_C_6 421 485 IPR000961 GO:0004674|GO:0005524|GO:0006468
Tsu01g02647 560 MobiDBLite consensus disorder prediction 521 538 - -
Tsu01g02647 560 PANTHER NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE 44 537 - -
Tsu01g02647 560 PANTHER SERINE/THREONINE-PROTEIN KINASE 44 537 - -
Tsu01g02647 560 MobiDBLite consensus disorder prediction 1 40 - -
Tsu01g02647 560 ProSiteProfiles Protein kinase domain profile. 122 420 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu01g02647 560 CDD STKc_NDR_like 120 484 - -
Tsu01g02647 560 Pfam Protein kinase C terminal domain 439 483 IPR017892 GO:0004674|GO:0005524|GO:0006468
Tsu01g02647 560 MobiDBLite consensus disorder prediction 499 560 - -
Tsu01g02647 560 SUPERFAMILY Protein kinase-like (PK-like) 96 468 IPR011009 -
Tsu01g02647 560 MobiDBLite consensus disorder prediction 501 515 - -
Tsu01g02647 560 Gene3D Transferase(Phosphotransferase) domain 1 206 438 - -
Tsu01g02647 560 Pfam Protein kinase domain 123 420 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu01g02647 560 ProSitePatterns Serine/Threonine protein kinases active-site signature. 241 253 IPR008271 GO:0004672|GO:0006468
Tsu01g02647 560 MobiDBLite consensus disorder prediction 9 28 - -
Tsu01g02647 560 Coils Coil 64 91 - -
Tsu01g02647 560 Gene3D Phosphorylase Kinase; domain 1 120 449 - -
Tsu01g02647 560 SMART serkin_6 122 420 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu01g02647 560 ProSitePatterns Protein kinases ATP-binding region signature. 128 151 IPR017441 GO:0005524
Tsu01g02647 560 MobiDBLite consensus disorder prediction 283 308 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g02647 Tsu-Chr1 29750054 29759167 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g02647 1 518 AGC Kinase Gene Family AT2G20470 77.543 0.0 832
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_NDR Tsu01g02647 Pkinase 3.9e-64 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g02647 K08790 - gmx:100820558 952.97
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g02647 01 29750054 29759167 Tsu01g02647 01 29750054 29759167 ECH
Tsu01g02647 01 29750054 29759167 Tsu07g03701 07 43190510 43197838 PCT