Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g02646 ATGATGAAAGTGGGATTTGAAGTTGTTCATGCAAATCCAAACATGATTCATCCTCACATGCATGAAACATGGGACTACACAATTGTTACAAATGACTTATTATTATTGCCACCTCCAATCCAAACAAACCCTTATCCAAAACCACTAACAGAAAATAACTCCTTAAACAACTTAGGACAAAATAATGAGGTGTGTGATTGGGTTGAACACATTACTAAACACATTGTTGAAGACCATTTACCACAAAACACTTCtgataataatattcataatctTCACATTCAAACAAACAATACTACCTTAGATTTAATTCATAATGATTATGAATGTGATCAAGGGTTGAATTTGATAACCCTTTTAATGGAATGTGCAGTGGCAATTTCAGTTGAAAATCTTGGTGAAGCTCATAGAATGTTACTAGAGTTAACACAATTAGTTTCACCTTACAAATCATCATGTGCTGAACGTGTTGTGGCTTATTTTGCAAAAGCTATGATAAGTAGAGTCATGAATTCATGGCTTGGAGTATGTTCACCTTTGATTGATCATAGAACCATTCACTCAGCACTACAGGTGTTCAACAATATTTCCCCTTTCATCAAATTTTCACATTTCACTTCAAACCAAGCGATTCTCGAAGCGGTTAATCGTTGTAATGACATTCATATCATTGATTTGGATATCATGCAAGGTCTTCAATGGCCAGCTTTTTTTCACATACTCGCGACTCGAATGGAGGGTCGACCAAAGGTTCGAATGACGGGGATGGGAGCGTCGATGGAGCTTCTTGTTGAGACGGGGAAAAACCTCTCGAATTTCGCGAGAAGGCTTGGTTTGTGTTTGGAATTTTACCCTATAGCATGTAAATTCGGCGAAGTTGTTGATATTTCCATGTTGCAAATTAGGCCTAATGAGACACTTGCAGTTCATTGGTTGCAACATTCTTTGTATGATTCAACTGGACCTGATTGGAAAACTTTGAGACTTCTTGAGGAATTAGAACCAAGAATCATAACTTTGGTAGAACAAGATGTTAACATTGGAGGTTCATTTTTGGACCGTTTTGTGGGTTCATTGCATTACTATTCAACCCTTTTTGATTCTCTTGGATCATATTTGCATAGTGATGATGCTAATAGAAACATTGTTGAACATAATCTTCTCTCTAAAGAGATTAACAATATATTGGCAATAGGAGGACCTAAGAGAAGTGGTGAAGAAAAGTTTAGGctttggagaaatgagcttgtTGCAAGTAATAGTTTTGAGCAAGTTTTAATGAGTTCTAATTCAATGGCTCAAGCACAATTGATATTGAACATGTTTTCACCAGCTCATGGTTATAGTCTTTCTCAAGTTGATGGCATGTTAAGGCTTGGATGGAAAGATACTAGTTTGTATACAGCTTCTTCTTGGACTTGTACAACTTCTAGGTAG 1437 0.3563 MMKVGFEVVHANPNMIHPHMHETWDYTIVTNDLLLLPPPIQTNPYPKPLTENNSLNNLGQNNEVCDWVEHITKHIVEDHLPQNTSDNNIHNLHIQTNNTTLDLIHNDYECDQGLNLITLLMECAVAISVENLGEAHRMLLELTQLVSPYKSSCAERVVAYFAKAMISRVMNSWLGVCSPLIDHRTIHSALQVFNNISPFIKFSHFTSNQAILEAVNRCNDIHIIDLDIMQGLQWPAFFHILATRMEGRPKVRMTGMGASMELLVETGKNLSNFARRLGLCLEFYPIACKFGEVVDISMLQIRPNETLAVHWLQHSLYDSTGPDWKTLRLLEELEPRIITLVEQDVNIGGSFLDRFVGSLHYYSTLFDSLGSYLHSDDANRNIVEHNLLSKEINNILAIGGPKRSGEEKFRLWRNELVASNSFEQVLMSSNSMAQAQLILNMFSPAHGYSLSQVDGMLRLGWKDTSLYTASSWTCTTSR 478
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g02646 478 Pfam GRAS domain family 116 473 IPR005202 -
Tsu01g02646 478 ProSiteProfiles GRAS family profile. 107 473 IPR005202 -
Tsu01g02646 478 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 14 474 IPR005202 -
Tsu01g02646 478 PANTHER OS05G0485400 PROTEIN 14 474 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Tsu01g02646 Tsu-Chr1 29741351 29742787 Transposed
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g02646 104 473 GRAS Transcription Factor Family AT3G54220 53.316 1.30e-129 388
       

Transcription factors information


Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Tsu01g02646 GRAS 2.6e-100 CL0063
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g02646 - - cam:101494668 798.505
       

Event-related genes


Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g02646 01 29741351 29742787 Tsu01g02646 01 29741351 29742787 ECH