Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g02633 ATGGATCATGTGATTGGTGGAAAGTTTAAACTAGGAAGGAAAATTGGGAGTGGCTCTTTTGGGGAGCTTTATCTAGCTGTTAATATACAAACTGGAGAGGAGGTGGCTGTTAAGCTGGAATCTGTGAAGACCAGACATCCGCAGCTTCACTATGAGTCAAAATTGTATATGCTTCTTCAAGGAGGAACGGGAATTCCCCACCTTAAATGGTTTGGTGTTGAGGGAGAGTACAATGTCATGGTTATTGACCTTCTTGGACCAAGTCTGGAAGATCTATTCAATTATTGTAACCGGAAATTCACATTGAAGTCAGTGTTGATGCTTGCCGAACAATTAATTAACAGAGTTGAATACATGCATTCAAGAGGCTTTCTTCACCGAGACATAAAGCCAGACAATTTTTTGATGGGCCTCGGGCGTAAAGCAAATCAAGTGTACGTCATTGACTACGGTCTTGGGAAAAAATATAGGGATCTTCAGACTCATAGGCACATACCATACAGGGAAAACAAGAACCTTACAGGCACAGCACGCTATGCAAGTGTCAACACTCATCTTGGAATCGAACAAAGCCGAAGGGATGATCTGGAATCTCTTGGTTATGTGCTCATGTATTTCTTAAGAGGAAGTCTTCCCTGGCAAGGACTGAGGGCtggaaacaaaaaacaaaaatatgataaaattagtgAGACGAAGGTGTCAACTTCGATAGAGTATCTCTGCAAATCATATCCCTCTGAGTTTGTATCATACTTCCACTATTGCCGATCATTGAGGTTTGAGGACAAGCCAGATTATTCATATTTGAAGAGACTTTTTCGAGATCTATTTATTCGAGAAGGCTATCAATTTGACTATGTTTTTGACTGGACTGTTTTGAAGTATCCACAAGCTGGTGGCACTTCTAGAGGACGGCATGGAACTGGCAAGGAAGCTATGTATGCACCTACGCCTGGACGGCAGCTACCAAACAAGACACCTGCACGTCATCCAGAAAGAACACCTGCACGTTATTATCCAGAAAGGACACCTGCACGTTATCCAGAAAGGACACCTGGACGTCAATTTCCCCAACAACCAGAAAGGATGCAAGTTGGGAGAGACATTCGAGAGAAATTATCTGGTGCTGTTGAAGCATTCACCCAGAGGAACCGCGCAAATGCTACTCCTCATCATGAACACGCCAGACATAAGACTTATGACGAAGTGCAATTTGCCCAACACAATCCAACTCGATATGAAAGCAATTCGAGAAGAGCCGTGATATCATCAAACAAGCCAAATTCCTCAGGTGACCATACTGGCAGAATGGCTTCAGGCGGGGCCCGTCCATCTGCCGCGCATAGAGGTCAACCTGTGTATGAGTATGAGACCAGACAACCAACTTTTGCACGGAATGGGTCTATGAGAGGCAACCGTGATGATCCTCTGAGGAACTTTGAACTCCTCACTATCAGGCGGTAA 1464 0.4344 MDHVIGGKFKLGRKIGSGSFGELYLAVNIQTGEEVAVKLESVKTRHPQLHYESKLYMLLQGGTGIPHLKWFGVEGEYNVMVIDLLGPSLEDLFNYCNRKFTLKSVLMLAEQLINRVEYMHSRGFLHRDIKPDNFLMGLGRKANQVYVIDYGLGKKYRDLQTHRHIPYRENKNLTGTARYASVNTHLGIEQSRRDDLESLGYVLMYFLRGSLPWQGLRAGNKKQKYDKISETKVSTSIEYLCKSYPSEFVSYFHYCRSLRFEDKPDYSYLKRLFRDLFIREGYQFDYVFDWTVLKYPQAGGTSRGRHGTGKEAMYAPTPGRQLPNKTPARHPERTPARYYPERTPARYPERTPGRQFPQQPERMQVGRDIREKLSGAVEAFTQRNRANATPHHEHARHKTYDEVQFAQHNPTRYESNSRRAVISSNKPNSSGDHTGRMASGGARPSAAHRGQPVYEYETRQPTFARNGSMRGNRDDPLRNFELLTIRR 487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g02633 487 ProSitePatterns Serine/Threonine protein kinases active-site signature. 124 136 IPR008271 GO:0004672|GO:0006468
Tsu01g02633 487 MobiDBLite consensus disorder prediction 404 435 - -
Tsu01g02633 487 Pfam Protein kinase domain 10 227 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu01g02633 487 PANTHER CASEIN KINASE-RELATED 1 475 - -
Tsu01g02633 487 MobiDBLite consensus disorder prediction 326 348 - -
Tsu01g02633 487 Gene3D Transferase(Phosphotransferase) domain 1 1 319 - -
Tsu01g02633 487 ProSiteProfiles Protein kinase domain profile. 9 278 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu01g02633 487 SMART serkin_6 9 287 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu01g02633 487 ProSitePatterns Protein kinases ATP-binding region signature. 15 38 IPR017441 GO:0005524
Tsu01g02633 487 MobiDBLite consensus disorder prediction 382 475 - -
Tsu01g02633 487 PANTHER CASEIN KINASE 1-LIKE PROTEIN 10 1 475 - -
Tsu01g02633 487 SUPERFAMILY Protein kinase-like (PK-like) 4 290 IPR011009 -
Tsu01g02633 487 MobiDBLite consensus disorder prediction 299 364 - -
Tsu01g02633 487 MobiDBLite consensus disorder prediction 387 403 - -
Tsu01g02633 487 CDD STKc_CK1_delta_epsilon 8 282 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g02633 Tsu-Chr1 29567141 29573899 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g02633 8 213 MAP Kinase Kinase Kinase AT3G06030 25.000 4.91e-13 69.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1 Tsu01g02633 Pkinase 6.1e-25 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g02633 K08960 - gmx:100789031 753.821