Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g02631 ATGAAGTTCCTACGCTCAGGGGAGCAGCAATTGGGAACAGATGAAACCACCTACCCTTCATCTCATCAATCTCTTGTCACCAATGATTTTTTCTCAGCAAGTACTGCTCATTCATTCCTACCTGGAAAACTTGATCATGATGATCTCAAGCCTGACACTGGCAATATAGAAGAAGCAGAATTATCTTTGCGTGAGAGTGGCGTATTGAACTACGAGGAAGCTCGAGCACTGCTAGGAAGATACGAGTATCAAAAAGGAAATCTAGTATCTGCTTTACATGTCTTTGAGGGAATAGATATAGGTGTTGTGACTCCTAAGATCAAAATTGCCCTTTCAAGAAACAAAGAATGCCGCAAGAAACATTCCCATAATCATGGTGAACCGGAAATGTCTATACATTCTGTTGGTTTACTGTTGGAATCACTCTTCCTAAAAGCAAAATCTTTGCAGGCTCTTGAAAGGTTTAAAGAAGCTGCGCAATCTTGCAAAGTTATTATGGACATAGTGGAATCTTCATTACCCGAAGGCTTGCCTGATAACTTTGGCGCTGAATGTAAATTGCAGGAGACCGTGAGCAAGGCAGTTGAGCTACTTCCAGAATTGTGGAAGCTTGCTGATTGTCCTCGTGAAGCTACTTTGTCTTATCGGCGAGCCCTCCTTCATCAATGGAATCTTGATGCGCAGACGACATCAAAGATTCAGAAagaatttgttgtttttcttctgTACAGTGGAGGAGAAGTAATGCCCCCGAATCTGCGTTCCCAAATGGATGGCTCGTTTGTACCAGGAAACAACATAGAGGAAGCTATACTTCTTCTAATGATTTTGCTGAGGAAAGTCTCTCTCAAGAGAATTGAGTGGGATCCTTCAATTTTAGACCACCTTTCATTTGCTCTGTCGGTTTCGGGAGATTTATCGAGTTTGGCCAATAATTTGGAAGAATTGCTCCCTGGTATTATCCGTCGAAGCGAAAGATTCCACACTCTAGCTCTTTGTTATTATGGAGCAGGTAAGGACTTGGTGGCACTTGATCTTCTCAGAAAATTGTTGAGCGGTAGAGAAATGCCAAAACATGTTCACGGTTTGTTAATGGCTTCTAAAATTTGTTGCGAGAACCCTGCTCTTGCAGAAGAAGGTGTAAGCTTTTCTCAGAGAGCGGTTGAGAGTTTGAACGGAAGATGTAAGCAGTTAGAACATGTTGCGAAATTCTATCACGGTGTTTCATTATCGGCACACTCAAAATTAGCCATTTCTGATTTCGAGAAGTTTAAGAGACAATCTGAGGCACTTCAAGCCTTGGAAACTGCTGGCAGAATGACTGGAATGAGTGACCCTCTAGTACTATACCATCTCAGTTTAGAATATGCAGAACAAAGGAAGTTGGATGACGCACTTTATTATGCAAAGTGCGTCATAAAACTGGAAGGTGGTTCTAATGTTAAAGGATGGTTACTGTTGGCTCGGATATTATCTGCTCAAAAAAAGTTTTTGGAAGCCGAATCTATTATTAACGCTGCTTTGGATCAGACTGGCAAATGGGATCAGGGTGATTTGCTGCGAACAAAAGCTAAGATTCAAATTGCACAGGGCCAGTTAAAGAGTGCCATTGAGACATACAGTCAGCTTCTTGCTGTTCTTCAAATTCAGAGAAAAAGTTTTGGTTCTTGGAAGAAGTTATATAAGGACAACCCAGATCTTGCTAGGAACTTGGAAGTGGAAATATGGCATGATCTTGCTCATGTGTACATCAGTCTTTCCCAGTGGCATGATGCAGAGGTCTGTCTTTCAAAATCTAAGGCCATCAAACCATACTCCGCTTCTAGATGTCATGCACTAGGTATAATGTATGAAGCAAAGGGCCTTTACAACGAGGCTCAACAAGCTTTTGGTGATGCTTTGAACATTGAGCCTGGCCATGTTCTCAGCTTAATATCCACTGCTGTAGTACTTAGACGTTGCAGTAACGAATCAAATCCTGCAGTCAGAAGTTTTTTGATGGATGCACTACGGCATGACAGATTGAATGCTTCTGCTTGGTATAATCTTGGCCTTTATCACAAGGCTGTAGGTACAGTCTCATCATTGGTTGAAGCTACAGAATGTTTTCAAGCAGCACAGTCTCTTGAAGAATCTACTCCACTTGAACCTTTCAGATGA 2160 0.4144 MKFLRSGEQQLGTDETTYPSSHQSLVTNDFFSASTAHSFLPGKLDHDDLKPDTGNIEEAELSLRESGVLNYEEARALLGRYEYQKGNLVSALHVFEGIDIGVVTPKIKIALSRNKECRKKHSHNHGEPEMSIHSVGLLLESLFLKAKSLQALERFKEAAQSCKVIMDIVESSLPEGLPDNFGAECKLQETVSKAVELLPELWKLADCPREATLSYRRALLHQWNLDAQTTSKIQKEFVVFLLYSGGEVMPPNLRSQMDGSFVPGNNIEEAILLLMILLRKVSLKRIEWDPSILDHLSFALSVSGDLSSLANNLEELLPGIIRRSERFHTLALCYYGAGKDLVALDLLRKLLSGREMPKHVHGLLMASKICCENPALAEEGVSFSQRAVESLNGRCKQLEHVAKFYHGVSLSAHSKLAISDFEKFKRQSEALQALETAGRMTGMSDPLVLYHLSLEYAEQRKLDDALYYAKCVIKLEGGSNVKGWLLLARILSAQKKFLEAESIINAALDQTGKWDQGDLLRTKAKIQIAQGQLKSAIETYSQLLAVLQIQRKSFGSWKKLYKDNPDLARNLEVEIWHDLAHVYISLSQWHDAEVCLSKSKAIKPYSASRCHALGIMYEAKGLYNEAQQAFGDALNIEPGHVLSLISTAVVLRRCSNESNPAVRSFLMDALRHDRLNASAWYNLGLYHKAVGTVSSLVEATECFQAAQSLEESTPLEPFR 719
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g02631 719 Gene3D Tetratricopeptide repeat domain 396 555 IPR011990 GO:0005515
Tsu01g02631 719 Gene3D Tetratricopeptide repeat domain 556 715 IPR011990 GO:0005515
Tsu01g02631 719 SUPERFAMILY TPR-like 423 546 IPR011990 GO:0005515
Tsu01g02631 719 MobiDBLite consensus disorder prediction 1 20 - -
Tsu01g02631 719 Pfam Tetratricopeptide repeat 608 639 IPR019734 GO:0005515
Tsu01g02631 719 SUPERFAMILY TPR-like 519 710 IPR011990 GO:0005515
Tsu01g02631 719 ProSiteProfiles TPR repeat profile. 607 640 IPR019734 GO:0005515
Tsu01g02631 719 SMART tpr_5 446 479 IPR019734 GO:0005515
Tsu01g02631 719 SMART tpr_5 517 550 IPR019734 GO:0005515
Tsu01g02631 719 SMART tpr_5 139 172 IPR019734 GO:0005515
Tsu01g02631 719 SMART tpr_5 573 606 IPR019734 GO:0005515
Tsu01g02631 719 SMART tpr_5 677 713 IPR019734 GO:0005515
Tsu01g02631 719 SMART tpr_5 481 514 IPR019734 GO:0005515
Tsu01g02631 719 SMART tpr_5 607 640 IPR019734 GO:0005515
Tsu01g02631 719 PANTHER PROTEIN NPG1 1 719 IPR043376 -
Tsu01g02631 719 PANTHER PROTEIN NPGR2 1 719 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g02631 Tsu-Chr1 29535032 29539722 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g02631 1 719 Calmodulin-binding Proteins AT4G28600 57.357 0.0 766
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g02631 K21843 - gmx:100800762 1093.95
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g02631 01 29535032 29539722 Tsu01g02631 01 29535032 29539722 ECH
Tsu01g02631 01 29535032 29539722 Tsu07g03707 07 43241397 43251097 PCT