Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g02626 ATGTCGAAGAGAGGTCGTGGTGGTTCCGCCGGGAACAAGTTCCGTATGTCACTGGGTCTTCCAGTGGCGGCGACGGTGAATTGCGCAGACAACACGGGAGCTAAGAATCTCTACATCATATCCGTCAAAGGAATCAAAGGTAGACTTAACCGTCTTCCTTCTGCTTGCGTTGGTGACATGGTGATGGCCACTGTCAAGAAGGGAAAACCTGATCTCAGGAAAAAGGTTTTGCCTGCCGTCATCGTTCGTCAGCGTAAACCATGGCGCCGAAAGGATGGAGTCTTTATGTACTTCGAGgATAATGCTGGTGTTATTGTGAATCCTAAGGGTGAAATGAAAGGTTCTGCTATCACTGGACCTATTGGTAAGGAGTGTGCTGATCTTTGGCCAAGAATTGCAAGTGCTGCCAATGCCATTGTATGA 423 0.4823 MSKRGRGGSAGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVLPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASAANAIV 140
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g02626 140 SMART Ribosomal_L14_2 19 140 IPR000218 GO:0003735|GO:0005840|GO:0006412
Tsu01g02626 140 Pfam Ribosomal protein L14p/L23e 22 140 IPR000218 GO:0003735|GO:0005840|GO:0006412
Tsu01g02626 140 Gene3D Ribosomal protein L14 1 140 IPR036853 GO:0003735|GO:0005840|GO:0006412
Tsu01g02626 140 PANTHER 60S RIBOSOMAL PROTEIN L23 1 140 - -
Tsu01g02626 140 PANTHER 50S/60S RIBOSOMAL PROTEIN L14/L23 1 140 IPR000218 GO:0003735|GO:0005840|GO:0006412
Tsu01g02626 140 SUPERFAMILY Ribosomal protein L14 11 140 IPR036853 GO:0003735|GO:0005840|GO:0006412
Tsu01g02626 140 Hamap 50S ribosomal protein L14 [rplN]. 19 140 IPR000218 GO:0003735|GO:0005840|GO:0006412
Tsu01g02626 140 ProSitePatterns Ribosomal protein L14 signature. 79 105 IPR019972 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g02626 Tsu-Chr1 29399128 29401095 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g02626 1 140 Cytoplasmic Ribosomal Protein Gene Family AT1G04480 98.571 3.01e-99 279
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g02626 K02894 - zju:107434236 283.878
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g02626 01 29399128 29401095 Tsu01g02626 01 29399128 29401095 ECH
Tsu07g03728 07 43498658 43500493 Tsu01g02626 01 29399128 29401095 PCT