Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g02624 ATGCGAGCTCTTGGGATTGCTGAAGCAAAAGTAAAACCGGTGTTAAAAAAGCTCCTCAAATTGTATGATAAAAATTGGGAACTTATCGAGGAAGGGAACTATAGAGCTCTTGCGGATGCTATATTTGAAGAAGGCGATAACTTTGAGGAGCCAGAAcagcaaaagaaaaacaagggAGTTATTAATGAAGAAGAGACCGAGGCTGAAAAAGATCCGATAAATGGTGAATCTGCTCGACCTTTGAAAAGATTGAGATTAAGAGGAGAGAACAATCCCCCTAGCTCAGCTTCTTCCCCATCAAAGAAGCCTCACATAGAAAAGGCCAATGCACTTGAGGGCAGCTCTGCACAGCACTCTCAAAACAATGCAGTGTCATCTGAGGAAAATGTGAGGATTGCAGCACGTCCAAGTCCTATACGGAATACCAGTTCTGACAGGGGAAAGCAACCTGGATCACCTCAAGTTTCTCTTGGAGGGAGAAGACATGTATCTGTAAGAGCATCTCCGTCTAAACATCCAACAGTTGAACCTGGAAAATTTCTGTTGCCAAGCTACCAAACGCCTCATGCTTATACAATGACGGAACCTAAACCGGAGCCTGTTGATGAGGCTGATTATGAGGTTCCCATTGCAATGGTTGCCCCTGaaCCATCAAGTTTAAGGCACTCGTCAATGAAGAATGGCATTACAAGAAAGCAGCAAGGTTGCAATGTCTCTATGACATCATCACATCACAACACAAATAAAGAAGGGGCTTCTGATGTTGTTATAGCTTCTTCAGCTCAGGGAGAAGTAAAACTTTCTCTGAGCTGCAGCTCAGCACTCCATGGATCAGATTTTCGCATGCCTACTCAAGAACAACTTCTAAAGATGATGGAGGATAAATGTCTgcaattatataaaattactGATCCAACATTTTCTGTCACAAAAATGTTGAAGGATATATGTGATAGCGTATTGGAATTTACTACCGATTCAAATGATGACGCACAAGAAGGTTCTATGACAATATCAAGCATTGATGTATCAAAGGAATCAGATGTTAATGGCACTCCAGGCATTGGGGGCAGTAAGGATTTGGACACGGGTTCTCACTCATCAAATGGATCAATCCAAGTTAATTCTTTTTCTGCCTTGGTTTCACCTCGAGGCCCCATTTCACCAGCCCATCAGAGCAGTTTGGATGATGCTGTACTGGTTTCCAAGATGGACAGGACAGATGATATTCCACAAAGTGATGTTAGAATGCAGCCAGAGGATCCCATGTATACAAATTCACTCAGTTTAGTAGTTGTTCCAAATCATCAGCTTACAGCAGATGATATAAGGTCTTTTCATGATGTTAACGACCTTACAAAAGGAGAAGAGAATAATCAAATTTCATGGGTGAATGAATCTACTAATGATTTCCCACCACCTTTCAGCTACATACCCCAAAACCTTGTGTTCCAAGATGCATGTGTCAAAATTTCTTTATCTCGTATTGGGGCCGAGGACTGCTGTTCCTGTATCGGGAGTTGCGTCTTGTCAACAAATTGTGCCTGTATAGAAAAAACTGGGGGCGAAGTTGCATATACTACTAAAGGCCTAATGAAGGAAGAATTTTTGGATGAGTGCATTGCTATCAGTCACAATCCTCAACAACATTGCTTTTATTGCAAAGATTGTCCACTTGAAAGGTCCAAGACTGATGGTTGTTTGGAACCATGTAAAGGACACTTGAAGAGAAAGTTTATTAAAGAATGTTGGAGCAAATGTGGCTGCGGGAAACAATGTGGCAACCGCGTTATCCAGCGAGGAATAGCATGCAACTTGCAGGTATTTTTCACTTCCGAAGGAAAAGGATGGGGACTTCGTACCTTAGAGGACCTGCCAAAAGGAGCATTTGTTTGCGAGTTTGTTGGAGAAATTTTAACTGTTAAAGAGCTGCATGAGAGGAATATGAAATGCGCTGAAAATGGCAAATCTACATACCCAATTCTACTGGATGCAGATTGGGATTCAGGATTTATGAAGGACGAAGAGGCTCTGTGCTTAGATGCAGCGTCCTTTGGCAACATCGCTAGATTTATCAATCACAGATGTTCTGATGCAAACTTGGTTGAAATCCCAATTCAAATGGAGTGTCCAGATCGTCGCTACCATCACTTTGCCCTTTTCACTACCAGAAAAATAGCAGCACATGAAGAGCTCACTTGGGACTATGGCATTGACTTTGATGACCATGATCAACCTGTCAAACTGTTTCAGTGCAAATGTGGCAGCAAGTTCTGCAGGAATATGAAGCGATCAAACAGATCCACTAGATCTGCGTTAATTGCTGGATGA 2331 0.4153 MRALGIAEAKVKPVLKKLLKLYDKNWELIEEGNYRALADAIFEEGDNFEEPEQQKKNKGVINEEETEAEKDPINGESARPLKRLRLRGENNPPSSASSPSKKPHIEKANALEGSSAQHSQNNAVSSEENVRIAARPSPIRNTSSDRGKQPGSPQVSLGGRRHVSVRASPSKHPTVEPGKFLLPSYQTPHAYTMTEPKPEPVDEADYEVPIAMVAPEPSSLRHSSMKNGITRKQQGCNVSMTSSHHNTNKEGASDVVIASSAQGEVKLSLSCSSALHGSDFRMPTQEQLLKMMEDKCLQLYKITDPTFSVTKMLKDICDSVLEFTTDSNDDAQEGSMTISSIDVSKESDVNGTPGIGGSKDLDTGSHSSNGSIQVNSFSALVSPRGPISPAHQSSLDDAVLVSKMDRTDDIPQSDVRMQPEDPMYTNSLSLVVVPNHQLTADDIRSFHDVNDLTKGEENNQISWVNESTNDFPPPFSYIPQNLVFQDACVKISLSRIGAEDCCSCIGSCVLSTNCACIEKTGGEVAYTTKGLMKEEFLDECIAISHNPQQHCFYCKDCPLERSKTDGCLEPCKGHLKRKFIKECWSKCGCGKQCGNRVIQRGIACNLQVFFTSEGKGWGLRTLEDLPKGAFVCEFVGEILTVKELHERNMKCAENGKSTYPILLDADWDSGFMKDEEALCLDAASFGNIARFINHRCSDANLVEIPIQMECPDRRYHHFALFTTRKIAAHEELTWDYGIDFDDHDQPVKLFQCKCGSKFCRNMKRSNRSTRSALIAG 776
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g02624 776 Gene3D SET domain 439 763 IPR046341 -
Tsu01g02624 776 CDD SET_SETDB-like 473 737 - -
Tsu01g02624 776 MobiDBLite consensus disorder prediction 112 128 - -
Tsu01g02624 776 MobiDBLite consensus disorder prediction 48 86 - -
Tsu01g02624 776 Gene3D - 1 47 IPR043017 -
Tsu01g02624 776 PANTHER INACTIVE HISTONE-LYSINE N-METHYLTRANSFERASE SUVR1-RELATED 1 771 - -
Tsu01g02624 776 MobiDBLite consensus disorder prediction 338 369 - -
Tsu01g02624 776 ProSiteProfiles Pre-SET domain profile. 500 601 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Tsu01g02624 776 SMART preset_2 449 588 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Tsu01g02624 776 MobiDBLite consensus disorder prediction 45 181 - -
Tsu01g02624 776 SUPERFAMILY SET domain 460 760 IPR046341 -
Tsu01g02624 776 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 1 776 IPR025776 -
Tsu01g02624 776 MobiDBLite consensus disorder prediction 136 151 - -
Tsu01g02624 776 Pfam Ubiquitin-binding WIYLD domain 1 46 IPR018848 GO:0018024
Tsu01g02624 776 Pfam SET domain 616 737 IPR001214 GO:0005515
Tsu01g02624 776 ProSiteProfiles SET domain profile. 604 737 IPR001214 GO:0005515
Tsu01g02624 776 SMART set_7 604 743 IPR001214 GO:0005515
Tsu01g02624 776 Pfam Pre-SET motif 453 596 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Tsu01g02624 776 PANTHER INACTIVE HISTONE-LYSINE N-METHYLTRANSFERASE SUVR1-RELATED 1 771 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g02624 Tsu-Chr1 29380019 29385994 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g02624 451 760 Su(var)3-9 homologs AT1G73100 30.488 3.18e-30 125
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Tsu01g02624 Pre-SET 2.8e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g02624 - - gmx:100778335 997.653
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g02624 01 29380019 29385994 Tsu01g02624 01 29380019 29385994 ECH
Tsu01g02624 01 29380019 29385994 Tsu07g03729 07 43503103 43511113 PCT