Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g02617 ATGTCAAGTGTGTCTAAAGATGAAAACTTGGCACTTTCTTCTGAGGATTCTTCTAGCCCAGATGAGTCTGAGCTTGAATTGGGTCTTGGTTTAAGCCTTTCTCACCCTACAAAATCTCACCACTACCATCAGAATGGTTCTTATGCTAGAATTTTCACTGCTAAGGATTTTTCttcttcaccttcttcttctattGGAACCAAAAGACCTGCTGATTCTCTTGATGCTACCAACCGTCCCAGTCAAGTAGTTGGATGGCCTCCACTTCGAACATATCGAGTGAATAGCTTTAATGCCAACACTAAATCAACTGAAGCATTCGACTCTGTGGCCGAGAAGAGCAAGAACAATAATACTGCGGTAAGGAAGAGTGCTGACAATGGAAATGATGATAACATCGTTaatatcaaagaaaaaagacACCTCAGGAATTCCCCGTTTGTCAAAGTAAAAATGGATGGAATACCGATTGGAAGAAAGATTGATTTGAGTGCTCACAGTTCCTATGAAACATTGGCACAAACATTGGAGGACATGTTTGACGAATCAACTACAAATGTCACTTGTAAAGGATCAAATGGGGAGGACCACAACATGACTATCAGAAGAAAAAGGCATTCAATACTGTTGGATGGATCTTCCAAGTTTGTACTCACTTATGAAGACAAGGAAGGAGATTGGATGCTTGTTGGAGATGTCCCTTGGGGGTAA 711 0.391 MSSVSKDENLALSSEDSSSPDESELELGLGLSLSHPTKSHHYHQNGSYARIFTAKDFSSSPSSSIGTKRPADSLDATNRPSQVVGWPPLRTYRVNSFNANTKSTEAFDSVAEKSKNNNTAVRKSADNGNDDNIVNIKEKRHLRNSPFVKVKMDGIPIGRKIDLSAHSSYETLAQTLEDMFDESTTNVTCKGSNGEDHNMTIRRKRHSILLDGSSKFVLTYEDKEGDWMLVGDVPWG 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g02617 236 MobiDBLite consensus disorder prediction 57 80 - -
Tsu01g02617 236 Pfam AUX/IAA family 67 235 IPR033389 -
Tsu01g02617 236 Gene3D - 140 236 - -
Tsu01g02617 236 MobiDBLite consensus disorder prediction 1 42 - -
Tsu01g02617 236 PANTHER AUXIN-RESPONSIVE PROTEIN IAA11 9 236 - -
Tsu01g02617 236 MobiDBLite consensus disorder prediction 57 87 - -
Tsu01g02617 236 ProSiteProfiles PB1 domain profile. 145 236 IPR000270 GO:0005515
Tsu01g02617 236 MobiDBLite consensus disorder prediction 108 131 - -
Tsu01g02617 236 SUPERFAMILY CAD & PB1 domains 141 235 - -
Tsu01g02617 236 MobiDBLite consensus disorder prediction 1 18 - -
Tsu01g02617 236 MobiDBLite consensus disorder prediction 108 132 - -
Tsu01g02617 236 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 9 236 IPR003311 GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g02617 Tsu-Chr1 29224775 29227063 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g02617 138 235 B3 DNA Binding Superfamily AT1G59750 34.694 4.07e-09 54.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX or IAA Tsu01g02617 AUX_IAA 1.4e-46 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g02617 K14484 - gmx:100779400 312.383
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g02617 01 29224775 29227063 Tsu01g02617 01 29224775 29227063 ECH