Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g02616 ATGACTTCATTGGTGTTGCTTGATCTGTCAGACAACATGTTATCGGGAAATATTCCGGCCGAAATAAGTCAGCTGAAGAATTTGCAGCTTCTGAACTTCATGAGGAACAAGCTATCTGGTCCTGTGCCTTCTGGCCTTGGAGAATTGCATCAACTGGAGGTTCTTGAGCTATGGAACAATTCCTTGTCAGGGCCATTGCCTAGTGACCTCGGCAAGAATTCGCCATTGCAGTGGTTGGATGTATCATCCAATTCACTCTCTGGCGAGATTCCAGAAACACTTTGCACTAAGGGCAATCTCACCAAGCTTATACTTTTCAACAATGCCTTCAAGGGTCCAATTCCAACAGGCCTATCAAAATGTCCTTCACTCGTTCGCGTTCGGATTCAAAACAATGTTCTTTCTGGTACAATTCCTGTTGGTTTTGGTAAGCTTGAGAAGCTTCAGAGGCTAGAATTGGCTAACAATAGTCTCACCGGTGGAATTCCGGACGACATTGCTTCCTCCACATCTCTTTCATTCATTGATTTCTCCAGAAACAAACTCTACTCTTATATTCCTTCCACTATTATTTCTATTCCAAATCTGCAAACATTCATGGTCTCTGAAAACAACCTTGAAGGTGATATTCCTGACCAATTCCAGGACTGTCCATCACTCGGAGTCCTGGATCTCTCGTCAAACTTTTTCTCTGGAATCATTCCAGCAAGCATTGCTTCGTGTCAGAAATTGGTAAAATTGAGCCTACAGAACAACCAATTGACTGGTGGCATCCCAAAAGCAATAACAAGCATGCCTACATTGTCCATTCTTGATCTTTCTAACAACTCTTTAACTGGTCAGATACCTGATAACTTTGGTATGTCTCCGGCTCTGGAAACATTCAATGTCTCATACAACAAGCTAGCAGGTCCTGTTCCGGAAAATGGCATGCTAAGAACGTTAAATCCAAACGATCTTGTGGGAAACATGGGCCTATGTGGTGGTTTCTTTTCTCCATGTGGAAAAACCTCGGCATATTCATTAAGGCACGGAAGCTCACATGGAAAGCACGTAATTGTAGGATGGATAATTGGACTATCATCAATCTTAGCCATTGGAGTCGCTGTTTTGGTAGCTAGATCTATATACATGAAGTGGTACACAGAAGGATTATGCTTCCGAGGAAGATTTTATGGAGGTAGCAAGGGATGGCCTTGGAGATTGATGGCATTCCAGAGACTCGATTTTACCAGTACTGATATCTTATCCTGCATCAAAGAAACAAATGTCATAGGCATGGGAGGGACTGGGGTCGTTTATAAGGCCGAGGTACCACAATCAAGTACAGTTGTGGCAGTCAAAAAATTGTGGAAATCAGGATCTGATGTTGAAGTAGGAAGTAGTGATGATCTTGTTGGAGAGGTGAATCTTTTAGGGAGGCTAAGGCATAGGAACATTGTTAAACTACTAGGGTTTCTCTATAATGACACTGATGTGATGATAGTGTACGAATTTATGCTCAATGGAAACCTTGGAGATGCCTTGCATGGTAAACAATCAGAGAGATTGCTTGTAGACTGGGTTTCACGGTATAACATAGCTCTAGGAGTCGCACAAGGACTCGCTTATCTTCATCACGACTGTCATCCACCTGTTATCCATCGAGACATCAAGTCAAATAATATACTGCTTGATGCAAACCTTGACGCAAGGATAGCAGATTTCGGATTAGCCAAGATGATGATCCGTAAGGATGAAACGGTCTCCATGATTGCTGGATCCTACGGATACATTGCCCCAGAATATGGATACTCCTTGAAGGTAGATGAAAAGATTGACATTTACAGCTTTGGAATAGTTCTGTTGGAGCTTATAACAGGAAAGCGGCCGATAGATCCAGAGTTTGGAGAATCTATAGACATTGTAGGGTGGATTAGAAGGAAGATAGACAAAAATTCCCCAGAAGAGGCATTAGACCCAAGTGTAGGAAACTGTAAACATGTTCAAGAGGAGATGCTTTTAGTTCTCAGAATAGCACTCCTTTGCACGGCCAAGCTACCTAAGGACAGACCCTCCATGAGGGATGTTATAATGATGCTAGGAGAGGCAAAGCCTCGGAGAAAAGGTGTTAGGAACAAAGAGATGTCAGTAATTAGCACATCAACAGTTAATGGCCTTCTttag 2166 0.4252 MTSLVLLDLSDNMLSGNIPAEISQLKNLQLLNFMRNKLSGPVPSGLGELHQLEVLELWNNSLSGPLPSDLGKNSPLQWLDVSSNSLSGEIPETLCTKGNLTKLILFNNAFKGPIPTGLSKCPSLVRVRIQNNVLSGTIPVGFGKLEKLQRLELANNSLTGGIPDDIASSTSLSFIDFSRNKLYSYIPSTIISIPNLQTFMVSENNLEGDIPDQFQDCPSLGVLDLSSNFFSGIIPASIASCQKLVKLSLQNNQLTGGIPKAITSMPTLSILDLSNNSLTGQIPDNFGMSPALETFNVSYNKLAGPVPENGMLRTLNPNDLVGNMGLCGGFFSPCGKTSAYSLRHGSSHGKHVIVGWIIGLSSILAIGVAVLVARSIYMKWYTEGLCFRGRFYGGSKGWPWRLMAFQRLDFTSTDILSCIKETNVIGMGGTGVVYKAEVPQSSTVVAVKKLWKSGSDVEVGSSDDLVGEVNLLGRLRHRNIVKLLGFLYNDTDVMIVYEFMLNGNLGDALHGKQSERLLVDWVSRYNIALGVAQGLAYLHHDCHPPVIHRDIKSNNILLDANLDARIADFGLAKMMIRKDETVSMIAGSYGYIAPEYGYSLKVDEKIDIYSFGIVLLELITGKRPIDPEFGESIDIVGWIRRKIDKNSPEEALDPSVGNCKHVQEEMLLVLRIALLCTAKLPKDRPSMRDVIMMLGEAKPRRKGVRNKEMSVISTSTVNGLL 721
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g02616 721 Gene3D Ribonuclease Inhibitor 97 338 IPR032675 -
Tsu01g02616 721 Gene3D Ribonuclease Inhibitor 1 96 IPR032675 -
Tsu01g02616 721 PRINTS Leucine-rich repeat signature 265 278 - -
Tsu01g02616 721 PRINTS Leucine-rich repeat signature 4 17 - -
Tsu01g02616 721 SUPERFAMILY L domain-like 2 342 - -
Tsu01g02616 721 Pfam Leucine Rich Repeat 268 286 IPR001611 GO:0005515
Tsu01g02616 721 Pfam Leucine rich repeat 194 254 IPR001611 GO:0005515
Tsu01g02616 721 SUPERFAMILY Protein kinase-like (PK-like) 411 694 IPR011009 -
Tsu01g02616 721 PANTHER UNNAMED PRODUCT 1 709 - -
Tsu01g02616 721 ProSiteProfiles Protein kinase domain profile. 419 701 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu01g02616 721 ProSitePatterns Protein kinases ATP-binding region signature. 425 449 IPR017441 GO:0005524
Tsu01g02616 721 Pfam Protein kinase domain 421 690 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu01g02616 721 SMART serkin_6 419 694 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu01g02616 721 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 1 709 - -
Tsu01g02616 721 Gene3D Phosphorylase Kinase; domain 1 410 499 - -
Tsu01g02616 721 SMART LRR_typ_2 1 25 IPR003591 -
Tsu01g02616 721 SMART LRR_typ_2 145 169 IPR003591 -
Tsu01g02616 721 SMART LRR_typ_2 49 73 IPR003591 -
Tsu01g02616 721 SMART LRR_typ_2 265 288 IPR003591 -
Tsu01g02616 721 ProSitePatterns Serine/Threonine protein kinases active-site signature. 546 558 IPR008271 GO:0004672|GO:0006468
Tsu01g02616 721 Gene3D Transferase(Phosphotransferase) domain 1 500 717 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g02616 Tsu-Chr1 29220306 29222657 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g02616 1 721 Receptor kinase-like Gene Family AT1G08590 62.111 0.0 865
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Tsu01g02616 Pkinase 1.2e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g02616 - - gmx:100788430 1236.86
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g02616 01 29220306 29222657 Tsu01g02616 01 29220306 29222657 ECH