Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g02610 ATGGGTATCCCACAATTTCTCGATAAAATCTCAGCTTTACCAACTTTACATTCCTCAGGATTGTTGAATAATCTTTCCAGCATGATTCTGGGACTGTCTGTATTGGAACTTGCAGCAGTATGTGTGAACCTGATACTTGTTGTCttgtttctctttcttgtttCTGTGAGAAAGATTCTTGTATATAAGAGAATTGCAATTGCTAAAGACAGCACTACTCGGAATGATAGTCCAATTTGCAGTTTTATTGATGGAGAAATAATAAGCGATGTTTCAATTAGTGTTTGGTTCAAGTTATCTGTGTTGtcttgtttttatgttttgtttgttcaaGTTTTGGTGTTGGGGTTTGATTTGGGTGCTTTCATTTGGGGTGAGGCTAATGAGAAAGTAATACACTGGTCTCTACTTTCTGTGCCAGCTTCACAAGTTTTAGCTTGGTCTGTGTTGAGTTTCTCAGCTTTGAATTGCAAATTTAAGGTTTTAGACAAGTTTCCATTCTTGTTAAGAGTTTGGTGGCTTTTGTCATTTGCTATTTGCTTGTGTACTTTATATGTTGATGGAAGAGGTGTTTGGTTGGAAGGTTCTAAGTACTTTTGTTCTCGTGCTGTTGCGAATTTTGCTGTTACTCCAGCACTTGCTTTTTTAGGTGTAGTTGCAATTAGGGGTGTTACTGGTATACAAATTGGTAGAAACACTTCTCTTCAAGAGCCATTActtgttgaagaagaagaagaactagGGTGTCTTAAGGTTACTCCATATAGGGATGCAGGACTTTTTAGCTTAGCTACACTTTCTTGGATGAATCCACTTCTTTCCATTGGTGCAAAGAGACCACTTGAGCTTAAGGACATTCCTCTTGTTGCACCAAGTGATAGAGCCAAGGCAAGTTACAAGAGTGTGAATTCTAATTGGGAGAAATTGAAGGCTGAAAATCAAAAACCCTCTAAGCAACCTTCACTAGCTTGGGCTCTTCTCAAGTCATTTTGGAAGGAAGCAGCTTTGAATGCTATCTTTGCTGGTTTGAATACTTTGGTTTCATATGTAGGTCCTTACATGATaagttattttgttgatttcttgGGTGGTAAAGAGACTTTTGCTCATGAGGGTTATATCCTTGCTGGTATATTCTTTGCGGCGAAACTTGTGGAGACACTTACAACTAGGCAGTGGTATCTAGGAGTTGATATATTAGGTATGCATGTTAGGTCAGCTCTAACTGCAATGGTGTATAGGAAGGGACTCAGACTCTCCAGCTCGGCGAAACAAAGTCACACAAGTGGAGAGATTGTTAACTACATGGCTGTTGATGTTCAGAGGGTAGGGGACTACTCATGGTATCTTCATGACATGTGGATGCTACCTCTGCAGATTGTTCTCGCCCTTGTAATTTTGTATAAGAATGTTGGAATTGCTTTTGTTGCAACATTGTTTGCTACAATAATTTCCATTGTTGTTACTATTCCTGTGGCTAGGATACAAGAAGAATATCAAGACAAGTTAATGACTGCTAAAGatgaaagaatgagaaaaacaTCCGAGTGTCTGAGAAATATGAGGATTCTCAAGCTGCAAGCTTGGGAGGATAGATATAGAATAAGATTGGAGGAAATGCGTGGAGTAGAGTTCAGGTGGTTAAGGAAAGCACTCTATTCTCAGGCTTTCATAACTTTCATATTTTGGAGTTCGCCTATATTTGTTTCAGCCGTCACATTTGCTACTACCATATTGTTAGGAACTCAGTTGACTGCAGGTGGTGTTCTCTCTGCACTAGCTACTTTCAGGATTCTTCAAGAACCACTCAGAAATTTTCCTGATTTGGTATCAACCATGGCTCAGACAAAGGTTTCACTTGATCGCATATCTGGTTTCCTGCAGGAAGATGAATTGCAGGAAGATGCAACTACTGTTTTGCCACATGGAACTTCTAACATTGCCATAGAAATTATGGATGGTGTCTTCTGCTGGGACACTTCTTCCTCTAGGCCTACTCTATCCGGAATACATATGAAAGTTGAAAGGGGGATGAGTGTAGCTATTTGTGGCATGGTTGGTTCTGGGAAATCAAGTTTTCTTTCTTGCATCCTTGGAGAGATTCCCAAGCTTTCTGGTGAaGTAAGAGTGTGTGGTTCTGCTGCATATGTCTCCCAATCAGCATGGATACAATCAGGAAATATAGAAGAAAATATTCTGTTTGGAAACCAAATGGATAAAATGAAGTACAAGAGTGTTATTCATGCTTGTTCACTGAAAAAGGACCTAGAACTTTTCTCACATGGAGACCAAACAATTATTGGTGACAGAGGTATAAATTTGAGTGGTGGCCAGAAGCAGCGGATTCAGCTTGCACGAGCACTCTACCAAGATGCTGATATTTATCTCCTTGACGATCCCTTTAGTGCACTTGATGCCCATACTGGATCAGAATTATTCAGAGAGTATGTGTTGTCAGCACTAGCAGATAAAACAGTCATTTTTGTGACCCATCAAGTTGAATTTCTTCCAGCTGCTGATATGATACTGGTTCTTAAAGAAGGCCACATCATACAGGCAGGAAAGTATGATGATCTGTTACAGGCAGGAACAGATTTTAGAACTCTTGTTTCAGCTCACCATGAAGCAATAGAGGCTATGGACATTCCTAATCACTCCTCCTCCTCAGAAGATTCAGATGAAAATGAGTCCTTGGATGCATCTATTATGACCATGAAGAAATCTATTTCTTCTGTAAATATTAACAGTTTGGCGAAAGAAATTCATGAGGGATCATCAGATCTTAAAGAAATAaaggaaaagaagaagataaaacGATCAAGAAAAAAACAGCTTGTTCAGGAAGAGGAGAGGGTTAGGGGTAGAGTCAACATGAAGGTTTACTTGTCTTACATGGCTGCCGCATATAAAGGCTTATTGATTCCCCTCATAATCATTGCACAAACATTATTTCAGTTCCTTCAGATTGCCAGCAATTGGTGGATGGCTTGGGAAAATCCTCAAACAGAGGGAGACGAACCCAAAGTAGCTCCCACAACTCTTCTTCTTGTTTACATGGCCCTTGCCTTTGGCAGCTCATGCTTTATATTTGTAAGGGCTGTTCTTGTGGCTACGTTTGGCCTAGAAGCAGCACAGAAGCTATTTTTCAACATGCTTAGAAGTATTTTCCATGCACCAATGTCTTTCTTTGACTCTACACCAGCTGGAAGGATCCTGAATCGTGTTTCAATTGATCAAAGTGTTGTGGATCTTGATATTCCTTTTAGACTTGGAGGGTTTGCTTCATCAACGATACAACTTATTGGCATTGTTGCGGTAATGTCAGAAGTTACATGGCAAGTTTTGCTCCTTGTAGTTCCAATGGCAATTGTTTGTTTGTGGATGCAGAAATACTACATGGCTTCATCAAGGGAACTGGTACGTATTGTAAGCATCCAGAAATCTCCAATTATACAACTTTTTGGTGAATCAATTGCTGGAGCATCCACCATCAGAGGTTTTGGACAACAAAAAAGGTTCTTGAAGAGGAACCTCTATCTTCTGGATTGTTTTACACGACCATTCTTCTGCAGTCTTGCAGCTATTGAGTGGCTCTGCCTGCGCATGGAATTACTTTCAACTTTTGTATTTGCTTTCTGCATGGTTTTACTTGTGAGCTTTCCCCGTGGAACTATCGATCCCAGTATGGCTGGACTTGCCGTGACATACGGCCTGAATTTAAATGGACGCTTGTCTCGCTGGATACTTAGCTTTTGTaagcttgaaaataaaattatatctaTTGAAAGAATTTATCAGTACAGTCAAATTCCTAGTGAAGCACCACCAGTTATTGAAGAATCTCGTCCTCCGTCCTCATGGCCCGAGAATGGGACAATCCAACTAATTGATCTGAAGGTTCGTTACAAGGAAAATCTTCCCTTGGTTCTTAATGGAGTATCCTGCACATTTCCTGGTGGGAAGAAGATTGGAATAGTTGGACGAACTGGCAGTGGCAAATCTACTTTGATTCAGGCATTATTTCGACTGGTTGAACCAGCAGCCGGGAGAATCCTTATAGACAACATTGATATCTCAGGAATTGGCCTTCATGACCTTCGCAGCCATTTGAGTATCATACCACAAGATCCAACGTTATTTGAAGGCACCATTCGAGGAAATCTTGATCCCCTTGAAGAACATTCGGATAAAGAGATTTGGGAGGCACTAGATAAGTCTCAGCTTGGACAGATCATCCGTGATCAAGAACAGAAGCTTGATACACCAGTGCTAGAAAATGGTGATAATTGGAGTGTAGGACAGCGGCAACTTGTTTCTCTTGGTCGAGCCCTACTCAAGCAGTCAAAGATACTTGTACTTGATGAAGCAACAGCATCTGTTGATTCTGCAACTGATAATCTTATCCAGAAGGTTATCCGTGAAGAGTTCAGAGACTGCACTGTGTGCACTATTGCTCATCGTATTCCTACTGTTATTGACAGTGATCTTGTTCTGGTACTCAGTGATGGTCTAGTTGCAGAGTTTGACACCCCATTGAGGCTATTAGAAGATAAGTCATCCATGTTTTTGAAGTTGGTGACTGAATATTCATCGCGATCAAGTGGCATGCcggatttttaa 4620 0.3942 MGIPQFLDKISALPTLHSSGLLNNLSSMILGLSVLELAAVCVNLILVVLFLFLVSVRKILVYKRIAIAKDSTTRNDSPICSFIDGEIISDVSISVWFKLSVLSCFYVLFVQVLVLGFDLGAFIWGEANEKVIHWSLLSVPASQVLAWSVLSFSALNCKFKVLDKFPFLLRVWWLLSFAICLCTLYVDGRGVWLEGSKYFCSRAVANFAVTPALAFLGVVAIRGVTGIQIGRNTSLQEPLLVEEEEELGCLKVTPYRDAGLFSLATLSWMNPLLSIGAKRPLELKDIPLVAPSDRAKASYKSVNSNWEKLKAENQKPSKQPSLAWALLKSFWKEAALNAIFAGLNTLVSYVGPYMISYFVDFLGGKETFAHEGYILAGIFFAAKLVETLTTRQWYLGVDILGMHVRSALTAMVYRKGLRLSSSAKQSHTSGEIVNYMAVDVQRVGDYSWYLHDMWMLPLQIVLALVILYKNVGIAFVATLFATIISIVVTIPVARIQEEYQDKLMTAKDERMRKTSECLRNMRILKLQAWEDRYRIRLEEMRGVEFRWLRKALYSQAFITFIFWSSPIFVSAVTFATTILLGTQLTAGGVLSALATFRILQEPLRNFPDLVSTMAQTKVSLDRISGFLQEDELQEDATTVLPHGTSNIAIEIMDGVFCWDTSSSRPTLSGIHMKVERGMSVAICGMVGSGKSSFLSCILGEIPKLSGEVRVCGSAAYVSQSAWIQSGNIEENILFGNQMDKMKYKSVIHACSLKKDLELFSHGDQTIIGDRGINLSGGQKQRIQLARALYQDADIYLLDDPFSALDAHTGSELFREYVLSALADKTVIFVTHQVEFLPAADMILVLKEGHIIQAGKYDDLLQAGTDFRTLVSAHHEAIEAMDIPNHSSSSEDSDENESLDASIMTMKKSISSVNINSLAKEIHEGSSDLKEIKEKKKIKRSRKKQLVQEEERVRGRVNMKVYLSYMAAAYKGLLIPLIIIAQTLFQFLQIASNWWMAWENPQTEGDEPKVAPTTLLLVYMALAFGSSCFIFVRAVLVATFGLEAAQKLFFNMLRSIFHAPMSFFDSTPAGRILNRVSIDQSVVDLDIPFRLGGFASSTIQLIGIVAVMSEVTWQVLLLVVPMAIVCLWMQKYYMASSRELVRIVSIQKSPIIQLFGESIAGASTIRGFGQQKRFLKRNLYLLDCFTRPFFCSLAAIEWLCLRMELLSTFVFAFCMVLLVSFPRGTIDPSMAGLAVTYGLNLNGRLSRWILSFCKLENKIISIERIYQYSQIPSEAPPVIEESRPPSSWPENGTIQLIDLKVRYKENLPLVLNGVSCTFPGGKKIGIVGRTGSGKSTLIQALFRLVEPAAGRILIDNIDISGIGLHDLRSHLSIIPQDPTLFEGTIRGNLDPLEEHSDKEIWEALDKSQLGQIIRDQEQKLDTPVLENGDNWSVGQRQLVSLGRALLKQSKILVLDEATASVDSATDNLIQKVIREEFRDCTVCTIAHRIPTVIDSDLVLVLSDGLVAEFDTPLRLLEDKSSMFLKLVTEYSSRSSGMPDF 1539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g02610 1539 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1293 1527 IPR003439 GO:0005524
Tsu01g02610 1539 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 79 1539 - -
Tsu01g02610 1539 Gene3D ABC transporter type 1, transmembrane domain 300 632 IPR036640 GO:0005524|GO:0016021
Tsu01g02610 1539 Gene3D ABC transporter type 1, transmembrane domain 935 1274 IPR036640 GO:0005524|GO:0016021
Tsu01g02610 1539 CDD ABC_6TM_ABCC_D1 336 623 IPR044746 GO:0140359
Tsu01g02610 1539 CDD ABC_6TM_ABCC_D2 974 1268 IPR044726 GO:0140359
Tsu01g02610 1539 ProSitePatterns ABC transporters family signature. 774 788 IPR017871 GO:0005524
Tsu01g02610 1539 Pfam ABC transporter 1310 1458 IPR003439 GO:0005524
Tsu01g02610 1539 PANTHER MULTIDRUG RESISTANCE PROTEIN ABC TRANSPORTER FAMILY PROTEIN 79 1539 - -
Tsu01g02610 1539 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1284 1522 IPR027417 -
Tsu01g02610 1539 CDD ABCC_MRP_domain1 649 848 - -
Tsu01g02610 1539 Pfam ABC transporter transmembrane region 1009 1218 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Tsu01g02610 1539 Pfam ABC transporter transmembrane region 338 603 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Tsu01g02610 1539 Coils Coil 914 948 - -
Tsu01g02610 1539 CDD ABCC_MRP_domain2 1291 1511 - -
Tsu01g02610 1539 SUPERFAMILY ABC transporter transmembrane region 973 1276 IPR036640 GO:0005524|GO:0016021
Tsu01g02610 1539 Gene3D - 647 879 IPR027417 -
Tsu01g02610 1539 Pfam ABC transporter 667 801 IPR003439 GO:0005524
Tsu01g02610 1539 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 976 1246 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Tsu01g02610 1539 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 335 615 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Tsu01g02610 1539 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 645 871 IPR027417 -
Tsu01g02610 1539 SMART AAA_5 676 857 IPR003593 -
Tsu01g02610 1539 SMART AAA_5 1319 1504 IPR003593 -
Tsu01g02610 1539 SUPERFAMILY ABC transporter transmembrane region 323 631 IPR036640 GO:0005524|GO:0016021
Tsu01g02610 1539 Gene3D - 1277 1529 IPR027417 -
Tsu01g02610 1539 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 649 872 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g02610 Tsu-Chr1 29160068 29166918 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g02610 663 865 Calmodulin-binding Proteins AT2G36910 31.982 3.37e-20 95.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g02610 - - cam:101514243 2602.01
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g02610 01 29160068 29166918 Tsu01g02610 01 29160068 29166918 ECH
Tsu07g03744 07 43612697 43621040 Tsu01g02610 01 29160068 29166918 PCT