Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g02588 ATGGCCACTGCTGCCAATCCAATTGTTGGTTCCCAGGTTTGGGTGGAGGACTCGGATGTAGCTTGGATAGATGGCGAGGTCTTGGAGGTTAACGGGGATGACATAAAAGTCCTTTGCACTTCAGGGAAGACGGTTGTTGTTAAAGCTTCCAGTATTTATCATAAAGATACAGAAGCTCCACCATGTGGAGTTGATGATATGACAAGGCTTGCTTACCTGCACGAACCTGGTGTCCTAGATAATCTGAGATCAAGATATGACATCAATGAAATTTATACTTACACTGGGAATATATTAATTGCTGTGAATCCTTTCATAAGGCTTCCTCATTTATATGATAGCCATATGATGGCACAATATAAAGGAGCAGGCTTTGGTGAGCTAAGCCCACATCCTTTTGCTATTGCTGATGCAGCATATAGGCTTATGATCAATGAGGGAATCAGCCAGTCAATATTGGTTAGTGGAGAAAGTGGGGCTGGTAAAACAGAAAGCACAAAGTTACTTATGCGCTACCTTGCTTACATGGGAGGGAGAGCTAATGTTGCTGAAGGTAGAACTGTTGAGCAGAAAGTCCTGGAGTCCAATCCTGTTCTAGAAGCCTTTGGAAATGCAAAGACTGTTAGAAACAATAATTCAAGTCGTTTTGGTAAGTTTGTGGAGATTCAATTTGACCAGAAGGGAAGAATTTCTGGAGCTGCTATCAGAACTTACCTGCTGGAAAGATCACGTGTTTGCCAGTTGTCGGACCCAGAGAGGAATTATCACTGTTTCTATATGCTTTGTGCTGCACCTCCAGAgGTTGTTCAGAAGTACAAATTAGGAAACCCAAGAACCTTTCATTATCTAAATCAAACAAATTGCTATGAGTTGGAAGGGTATGATGAATTTAAAGAATATTGTGATACAAGGAGAGCAATGGACGTTGTTGGAATAAGTTCTGAGGAGCAGGAAGCAATATTTCGAGTGGTTGCtgcaattttacatcttggCAACATTGAATTTTCAAAAGGAAAGGAAATGGACTCGTCTATGCCCAAAGATGAAAAATCTCAGTTTCACCTACAGACTGCGGCTGAACTTTTCATGTGTGATGCAAAGGCACTAGAAGATTCTCTTTGCCAGCGAGTAATTGTTACTCGTGATGAAACTATTGTAAAATGCCTGGATCCAGAAGCTGCTACGCTGAGCCGAGATGCTTTAGCTAAGGTTGTGTACTCGAGGTTGTTTGACTGGCTGgtagataaaattaataattcaattGGTCAGGATCCTGACTCAAAGTCCTTAATCGGCGTGCTGGATATTTATGGTTTTGAGAGTTTCAAGACTAACAGTTTTGAGCAATTCTGTATTAATTTGACCAATGAAAAGCTCCAGCAACATTTTAATCAGCATGTTTTCAAAATGGAGCAAGAAGAATACAAGAAAGAGGAGATTGATTGGAGTTACATTGAATTTGTTGACAACCAAGATATTTTGGATCTCATTGAAAAGAAACCTGGAGGCATTATCGCTCTTCTCGATGAAGCTTGTATGTTTCCTAGATCAACAAATGAAACTTTTGCGCAAAAGCTGTATCAGACGTTCAAAAACCATAAAAGGTTCAGCAAGCCCAAATTGTCACGTAGTGACTTCACAATTTGCCATTATGCTGGTGATGTGACTTATCAAACTGATTTATTCCTGGACAAGAACAAAGATTATGTTGTTGCAGAACATCAGGCACTTCTGTATGCTTCCAAGTGCCCCTTTGTATCGGGTTTATTTCTCCCCTCACCTGAGGAATCGTCCAATAAATCAAAGTTTTCTTCAATTGGTTCTCGGTTTAAGCAACAATTACAAGCACTACTTGAAATTCTTAGTTCCACTGAGCCACACTACATTCGCTGTGTTAAACCCAATAATCTTCTCAAGCCAGCAATTTTTGAGCACAAAAATGTTTTGCAGCAACTGCGCTGTGGAGGTGTCATGGAGGCAATCAGGATAAGCTGCGCTGGCTATCCCACCAGAAAAACGTTTGATGAATTCGTGGATCGATTTGGGCTTCTTGCACCTGAAGCTTTGGATCGTAGTTCTGATGAGGTCACTGCTTGCAAGAGGATTTTGGAGAAGGTTGGGCTTAAAGGATATCAGATTGGTAAAACCAAAGTGTTTCTTAGAGCTGGTCAAATGGCAGAACTAGATACTTATAGAAGTGAGATCTTAGGAAAGTCAGCAAGCATTATTCAAAGGAAAGTTCGTTCCTATTTGGCCCGCCGAAGTTTTGTCTCGATTCGCTTGTCTGCTATACAGATACAAGCTGCATGCAGAGGACAACTTGCTCGGGAAGTATACGAAGGATTGCGGCAAGAGGCTTCTAGTCTGATCATTCAGAGGTGTTTCCGCATGCATATTGCTAGGAAGGCATACAATGAATTGTATAGCTCAGCTATTTCTATTCAAACTGGCATGCGAGGGATGGCTGCTCGCTGTGAGCTGTGCTTTAGGAAGCAGACCAGGGCAGCTATTATCATTCAGAGCCACTGCCGGAAATACTTGGCCCAACATCATTTTATAAACTTAAAGAAGGCAGCAATTGCCACCCAATGTGCATGGAGAGGAAAAGTCGCTCGGCGAGAACTACGAAATCTCAAGATGGCTGCAAGAGAAACTGGAGCTCTCCAAGCTGCCAAAAATAAGCTTGAAAAGCAAGTTGAAGATCTTACATTGAGGTTGCAGCTGGAAAAACGCATGAGGGTTGACATGGAAGAAgcaaaaaaacaagaaaatgaaaaattacaatCTGCTTTGCAAGAGATGCAACTTCAGTTCAAAGAAACTAAATCATTGCTTCAAAAAGAGCGTGAGGCTGCAAAAAGAGAAGCAGAGAGGGTGCCTGTCATACAGGAGGTTCCTGTTGTTGACCATCCTTTGTTGGAGAAGCTAACGAGTGAAAATGAGCAACTTAAGACCTTGGTGAGTTCATTGGAAAGGAAAATAGATGAAACAGAGAAAAGGTATGAAGAGGCAAATAAACTCAGTGAAGAAAGGTTGAAGCAAGCTTTGGATGCTGAATCGAAAATAATCCAGTTGAAAACTTCTATGCAAAGGATTGAAGAGAAATTCTTAGATATGGAATCTGAAAATCAAGTCCTTCGGCAACAGTCTCTGCTTAACTCATCTGTGAAAACAATGTCAGAGCACCTTTCTACCCATGTATATGAGAAGTTGGAAAATGGTCACCATGTGGTAGAAGATCAGAAAGCTACTGAAACACAGACTGTCACACCTGTGAAAAAGTTCGGTACAGAGTCTGATAGCAAATTAAGGAGATCATACATTGAACGTCAACATGAAAATGTTGATTCCCTTATCAATTgtgttatgaaaaatattggaTTCCATCATGGAAAGCCTATTGCCGCATTCACTATTTACAAATGTCTTCTCCACTGGAAATCATTTGAAGCCGAAAGAACAAGTGTATTTGATCGCCTTATCCAGATGATTGGTTCTGCAATtgagAATCAAGATGACAATGATCTTATGGCTTACTGGCTGTCAAATACATCTGCACTATTGTTTCTGCTCCAACAAAGTTTAAAATCCGGTGGTTCAAATGACGCAACCCCAGTTAAAAAACCACCAAATCCAACATCCCTCTTTGGAAGAATGACTATGGGTTTTCGATCATCTCCTTCTTCTACAAACCTTCCTGCCCCGTCGGAGGTTGTACGCAAAGTAGAGGCTAAGTATCCTGCTTTGCTTTTCAAGCAACAGCTGACAGCCTATGTGGAGAAAATATATGGTATCTTGCGGGACAATTTGAAGAAAGAGTTGGCATCATTTATTTCGTTATGTATCCAGGCACCAAGAACATCAAAGGGAGTCTTAAGATCTGGCCGATCTTTTAGTAAAGATTCTCCCATGGGTCATTGGCAGAGTATTATTGAATCCCTCAACACTATTCTCTGTACTATGAAAGAGAACTTTGTGCCTCCTGTCCTTGTCCAAAAGATCTTCTCTCaaacattttcatatattaatgtTCAACTCTTCAATAGTCTTCTTCTGCGGCGTGATTGTTGCACATTCAGCAATGGAGAATATGTGAAGGCTGGTTTAGCAGAATTGGAGCTGTGGTGCTGCCAAGCAAAGGAGGAGTATGCTGGGACATCTTGGGATGAGCTCAAGCACATTAGACAGGCAGTTGGGTTCTTGGTTATCCATCAGAAGTATAGGATTTCCTATGATGAAATCATTAATGATTTATGCCCTATCATGAGTGTTCAGCAGCTGTACAGAGTATGCACACTTTACTGGGATGCTAACTACAACACTCGAAGTGTATCTCCAGatGTCCTTTCAAGCATGAAAGTACTTATGGCTGAGGACTCTAATAATGCTCAGAGTGATTCTTTCTTGTTGGATGACACTTCCAGCATCCCATTCTCAGTTGATGACCTCTCTACATCATTGCAAGAGAGAGATTTTTCTGAGATGAAACCAGCAGATGAGCTTCTCGAGAATCCCGCCTTCCAATTTTTGAATGAGTAG 4539 0.4045 MATAANPIVGSQVWVEDSDVAWIDGEVLEVNGDDIKVLCTSGKTVVVKASSIYHKDTEAPPCGVDDMTRLAYLHEPGVLDNLRSRYDINEIYTYTGNILIAVNPFIRLPHLYDSHMMAQYKGAGFGELSPHPFAIADAAYRLMINEGISQSILVSGESGAGKTESTKLLMRYLAYMGGRANVAEGRTVEQKVLESNPVLEAFGNAKTVRNNNSSRFGKFVEIQFDQKGRISGAAIRTYLLERSRVCQLSDPERNYHCFYMLCAAPPEVVQKYKLGNPRTFHYLNQTNCYELEGYDEFKEYCDTRRAMDVVGISSEEQEAIFRVVAAILHLGNIEFSKGKEMDSSMPKDEKSQFHLQTAAELFMCDAKALEDSLCQRVIVTRDETIVKCLDPEAATLSRDALAKVVYSRLFDWLVDKINNSIGQDPDSKSLIGVLDIYGFESFKTNSFEQFCINLTNEKLQQHFNQHVFKMEQEEYKKEEIDWSYIEFVDNQDILDLIEKKPGGIIALLDEACMFPRSTNETFAQKLYQTFKNHKRFSKPKLSRSDFTICHYAGDVTYQTDLFLDKNKDYVVAEHQALLYASKCPFVSGLFLPSPEESSNKSKFSSIGSRFKQQLQALLEILSSTEPHYIRCVKPNNLLKPAIFEHKNVLQQLRCGGVMEAIRISCAGYPTRKTFDEFVDRFGLLAPEALDRSSDEVTACKRILEKVGLKGYQIGKTKVFLRAGQMAELDTYRSEILGKSASIIQRKVRSYLARRSFVSIRLSAIQIQAACRGQLAREVYEGLRQEASSLIIQRCFRMHIARKAYNELYSSAISIQTGMRGMAARCELCFRKQTRAAIIIQSHCRKYLAQHHFINLKKAAIATQCAWRGKVARRELRNLKMAARETGALQAAKNKLEKQVEDLTLRLQLEKRMRVDMEEAKKQENEKLQSALQEMQLQFKETKSLLQKEREAAKREAERVPVIQEVPVVDHPLLEKLTSENEQLKTLVSSLERKIDETEKRYEEANKLSEERLKQALDAESKIIQLKTSMQRIEEKFLDMESENQVLRQQSLLNSSVKTMSEHLSTHVYEKLENGHHVVEDQKATETQTVTPVKKFGTESDSKLRRSYIERQHENVDSLINCVMKNIGFHHGKPIAAFTIYKCLLHWKSFEAERTSVFDRLIQMIGSAIENQDDNDLMAYWLSNTSALLFLLQQSLKSGGSNDATPVKKPPNPTSLFGRMTMGFRSSPSSTNLPAPSEVVRKVEAKYPALLFKQQLTAYVEKIYGILRDNLKKELASFISLCIQAPRTSKGVLRSGRSFSKDSPMGHWQSIIESLNTILCTMKENFVPPVLVQKIFSQTFSYINVQLFNSLLLRRDCCTFSNGEYVKAGLAELELWCCQAKEEYAGTSWDELKHIRQAVGFLVIHQKYRISYDEIINDLCPIMSVQQLYRVCTLYWDANYNTRSVSPDVLSSMKVLMAEDSNNAQSDSFLLDDTSSIPFSVDDLSTSLQERDFSEMKPADELLENPAFQFLNE 1512
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g02588 1512 Coils Coil 973 1049 - -
Tsu01g02588 1512 SMART iq_5 758 780 IPR000048 GO:0005515
Tsu01g02588 1512 SMART iq_5 735 757 IPR000048 GO:0005515
Tsu01g02588 1512 SMART iq_5 806 828 IPR000048 GO:0005515
Tsu01g02588 1512 SMART iq_5 854 876 IPR000048 GO:0005515
Tsu01g02588 1512 SMART iq_5 783 805 IPR000048 GO:0005515
Tsu01g02588 1512 SMART iq_5 831 853 IPR000048 GO:0005515
Tsu01g02588 1512 SMART MYSc_2a 57 734 IPR001609 GO:0003774|GO:0005524|GO:0016459
Tsu01g02588 1512 Pfam Myosin head (motor domain) 64 721 IPR001609 GO:0003774|GO:0005524|GO:0016459
Tsu01g02588 1512 Gene3D Myosin VI head, motor domain, U50 subdomain 313 602 - -
Tsu01g02588 1512 Pfam Myosin N-terminal SH3-like domain 10 52 IPR004009 GO:0003774|GO:0005524|GO:0016459
Tsu01g02588 1512 ProSiteProfiles IQ motif profile. 784 813 IPR000048 GO:0005515
Tsu01g02588 1512 Pfam IQ calmodulin-binding motif 762 779 IPR000048 GO:0005515
Tsu01g02588 1512 Pfam IQ calmodulin-binding motif 787 804 IPR000048 GO:0005515
Tsu01g02588 1512 Pfam IQ calmodulin-binding motif 738 756 IPR000048 GO:0005515
Tsu01g02588 1512 Pfam IQ calmodulin-binding motif 857 876 IPR000048 GO:0005515
Tsu01g02588 1512 Pfam IQ calmodulin-binding motif 833 852 IPR000048 GO:0005515
Tsu01g02588 1512 PRINTS Myosin heavy chain signature 483 511 IPR001609 GO:0003774|GO:0005524|GO:0016459
Tsu01g02588 1512 PRINTS Myosin heavy chain signature 197 224 IPR001609 GO:0003774|GO:0005524|GO:0016459
Tsu01g02588 1512 PRINTS Myosin heavy chain signature 149 174 IPR001609 GO:0003774|GO:0005524|GO:0016459
Tsu01g02588 1512 PRINTS Myosin heavy chain signature 430 458 IPR001609 GO:0003774|GO:0005524|GO:0016459
Tsu01g02588 1512 PRINTS Myosin heavy chain signature 92 111 IPR001609 GO:0003774|GO:0005524|GO:0016459
Tsu01g02588 1512 ProSiteProfiles Myosin motor domain profile. 62 733 IPR001609 GO:0003774|GO:0005524|GO:0016459
Tsu01g02588 1512 CDD MyosinXI_CBD 1109 1481 IPR037975 GO:0007015
Tsu01g02588 1512 ProSiteProfiles IQ motif profile. 855 884 IPR000048 GO:0005515
Tsu01g02588 1512 Gene3D - 253 311 - -
Tsu01g02588 1512 Coils Coil 878 951 - -
Tsu01g02588 1512 ProSiteProfiles IQ motif profile. 759 788 IPR000048 GO:0005515
Tsu01g02588 1512 PANTHER MYOSIN-14 7 1510 - -
Tsu01g02588 1512 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 788 884 IPR027417 -
Tsu01g02588 1512 ProSiteProfiles Dilute domain profile. 1158 1458 IPR002710 -
Tsu01g02588 1512 ProSiteProfiles IQ motif profile. 807 836 IPR000048 GO:0005515
Tsu01g02588 1512 Gene3D Kinesin motor domain 65 663 IPR036961 -
Tsu01g02588 1512 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 34 786 IPR027417 -
Tsu01g02588 1512 CDD MYSc_Myo11 76 721 IPR036018 -
Tsu01g02588 1512 Pfam DIL domain 1334 1437 IPR002710 -
Tsu01g02588 1512 Gene3D - 834 883 - -
Tsu01g02588 1512 Gene3D - 786 833 - -
Tsu01g02588 1512 Gene3D - 736 785 - -
Tsu01g02588 1512 Gene3D - 668 731 - -
Tsu01g02588 1512 PANTHER MYOSIN 7 1510 - -
Tsu01g02588 1512 SMART DIL_2 1333 1440 IPR002710 -
Tsu01g02588 1512 ProSiteProfiles Myosin N-terminal SH3-like domain profile. 8 57 IPR004009 GO:0003774|GO:0005524|GO:0016459
Tsu01g02588 1512 Gene3D - 440 624 - -
Tsu01g02588 1512 ProSiteProfiles IQ motif profile. 738 765 IPR000048 GO:0005515
Tsu01g02588 1512 ProSiteProfiles IQ motif profile. 832 861 IPR000048 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g02588 Tsu-Chr1 28896219 28914630 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g02588 1 1511 Myosins gene family AT5G43900 75.148 0.0 2357
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g02588 K10357 - gmx:100791070 2761.48
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g02588 01 28896219 28914630 Tsu01g02588 01 28896219 28914630 ECH
Tsu07g03767 07 43893710 43905493 Tsu01g02588 01 28896219 28914630 PCT
Tsu07g04595 07 50613010 50622845 Tsu01g02588 01 28896219 28914630 PCT