Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g02575 ATGCCTAAAGAAATGAAGTCCAAGCACAATCCATCAAATGTAGTAGCCAAATTAATGGGGCTTGAAACCCTTTCAAAGGGAGAGCCTAATTTATCTGTGATTAGAAGCCAAACAAAAGATTATTCTCAAGACATGTGTGCTCATTTAGGATGGCCATTGAAACATTGGAAGGTGGAAGATAAGTTTATGATGGATAATAAGGAAATGCTTCTTGAAGTTCATCATCCAAGCACTGAACAGATTGGTCACAAAGATGGATATGAAACATGGTTGCAGTCTCAGAGAGGAAGGTGGAGAGAAGATTTTGATGAGGGGAAGATGGCTCTTGTCCGTCAGAAATTCATCGAAGCAAAGTATCTGTCAACAGATGAGACGTTGCGTCAATCCAAGCAATTTGAAGATGCATTGGATATTTTAAGCTCAAACAATGATCTCTTAGTCAGGTTTTTGGATTCACAAAAGCTTTATCAACTTCCCTCTACTCCACCAGACGATTCAAACTGCATTACCCTTATCAAACCTTTGAAGATGTTTGGAAATGACAAATTTTCCGGAAAGGGTAGGAAGAATGATAGATTGATTAAGAAACCAGCAGATTCGGATCAAACGACTGTATGGGAGAACATGAATCGTGGATACTCTCCGGAATCTACTCGAATAGTAGTATTGAAACCTACTCCTGGGAGGACAAATGAACTTAAGGCTTTAGTTTCTCCAACAAATCCATCACCTCAAAGTTTCTATCAGGgaaatgaaaatgataatgTACTTGAATCCATAAAAGTGGCTAAAGAGATTagaatgcaaatgcaaatgcaagaAGGCCTAAGGAGCTATCAAAAGGATAAAACTTTATTACATTCTTCAGCATTTTCCAATGGCTATTCTAGTGATGATAGCTCATATTACAAATCATATCATGATTTGGAAGCTATGTCACCAATGCCAAGGCATTCATGGGATTGTATCAATGTATGCGGAAGTCCTTATTCTACGCAATCTATGGGTCGTGCAACATGTTCTCCCGAGTCATCGGTGTGCATAGAGGCAAAGAAACGGCTTTCTGAAAGATGGAATACAGTTACAGCTAAAGGAAAAGATCATCAAGAACAAAGGCGTGTAGCGAGAAACTCTACCTTAGGCGAAATGCTTTCTCTTTCCCTTGTAAAGAAATCTGTAACATCTGTGGTTGAGAGTGCTAATAAACACCAAGAAGAACCAAGTAAATCTCTTTCTTGCAGTCAATCTGTCAATGAAGAAATGAGCACGGATGATTCATATCAAAATGTTTCTTTGGAAAATTCGGTTCCTGCATCTTCTACTGTCTATGAACCCGGCCTCGGCATTGATGCTAGCACAGAACATGACTCCAAGGTGGTGGCAAAGTCAAAGAGTAAGAAATCATCGTTTAAAGGGAAAGTGGCAAGTTTCTTCTTTTCAATGAGTAAAAAATCAACCAAGAAAAAATCTAGTTCGTCTCAATCTAAAGATGAATCTGAAACCACTGTCACCGAAACATCAGTTCCATCAGTAAATTCACCTGGACATAATGTGTCTCAAAGCTCAAATGTTGGTGGATTTGAAGAGTCTCTTGCAGCTCAGTGTGAATCGTCATCAGATTCATTTTCTTGTGGACAACAAGAAGACATGATTACACTAGAGCCTGGATTGACCGAGTCAAAGCCTGTGGTGCTAGAGATTCCAAATGAAAAACAGGATCGGCCAAGTCCAATCTCAGTATTGGAATCTCCATTTGAAGATTATAATACAGCTCATGAGTCCTTGGAATGCATGAAGGGTGGTCACATGGGATCATTGGTGTCACTGAAGTCCAATTTAATTGACAAATCACCACCAATAGAATCAGTAGCTAGGACACTATCATGGGATGAAGATTCTTGTGCAGAGTTAACAAGGGCTTCTTCCTTAGACACCAAGTTAGAGGAACATGATTGGCTTCTCTTAGTCCAAAAACTACTATCAGCATCTGGGCTAGATGATGATCAAGAACAACAGAATGACTCATTTCACACAAGATTCCATTCACTTGAAAGCCCATTGGACCCATCATTGAGGGACACATATGCCAACATAAATGACAATAAGGACTGTACTCAGCCTCTTAATGAGGCCAAGAGAAGGAAAATGAGATCAAATCAGAAACTTGTATTTGATTGTGTTAATGCTGCACTATTGGAAGTTGTTGGTTATGGGTCAGAGAATTACTTCAAGATGTACTGTGGGACCCACAGGAGAGCCCTAGTTAAAGAGGGTTCATGTTTGATGGACCACATTTTGACTCAAATGAAAGAATTAATAGCAAATGGGATGAGGTTTGTTTGGGGTGGGGACAGTCACAGCCTGGTTGTAGAAAATGTTGTTAGGAAAGAGGTTGTGCAGACTGGTTTGGTTGAGGTTATGAGAATGGAGATTGATGCTTTGGGCAGGGAAATAGAAGGAAAGATAATAGAAGAATTAGTGGAAAATGTTGTGCTTGATTTTACAGGAAGATGA 2514 0.3902 MPKEMKSKHNPSNVVAKLMGLETLSKGEPNLSVIRSQTKDYSQDMCAHLGWPLKHWKVEDKFMMDNKEMLLEVHHPSTEQIGHKDGYETWLQSQRGRWREDFDEGKMALVRQKFIEAKYLSTDETLRQSKQFEDALDILSSNNDLLVRFLDSQKLYQLPSTPPDDSNCITLIKPLKMFGNDKFSGKGRKNDRLIKKPADSDQTTVWENMNRGYSPESTRIVVLKPTPGRTNELKALVSPTNPSPQSFYQGNENDNVLESIKVAKEIRMQMQMQEGLRSYQKDKTLLHSSAFSNGYSSDDSSYYKSYHDLEAMSPMPRHSWDCINVCGSPYSTQSMGRATCSPESSVCIEAKKRLSERWNTVTAKGKDHQEQRRVARNSTLGEMLSLSLVKKSVTSVVESANKHQEEPSKSLSCSQSVNEEMSTDDSYQNVSLENSVPASSTVYEPGLGIDASTEHDSKVVAKSKSKKSSFKGKVASFFFSMSKKSTKKKSSSSQSKDESETTVTETSVPSVNSPGHNVSQSSNVGGFEESLAAQCESSSDSFSCGQQEDMITLEPGLTESKPVVLEIPNEKQDRPSPISVLESPFEDYNTAHESLECMKGGHMGSLVSLKSNLIDKSPPIESVARTLSWDEDSCAELTRASSLDTKLEEHDWLLLVQKLLSASGLDDDQEQQNDSFHTRFHSLESPLDPSLRDTYANINDNKDCTQPLNEAKRRKMRSNQKLVFDCVNAALLEVVGYGSENYFKMYCGTHRRALVKEGSCLMDHILTQMKELIANGMRFVWGGDSHSLVVENVVRKEVVQTGLVEVMRMEIDALGREIEGKIIEELVENVVLDFTGR 837
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g02575 837 MobiDBLite consensus disorder prediction 496 523 - -
Tsu01g02575 837 MobiDBLite consensus disorder prediction 487 523 - -
Tsu01g02575 837 MobiDBLite consensus disorder prediction 398 430 - -
Tsu01g02575 837 Pfam Domain of unknown function (DUF4378) 656 828 IPR025486 -
Tsu01g02575 837 Pfam Protein of unknown function (DUF3741) 111 152 IPR022212 -
Tsu01g02575 837 PANTHER M REDUCTASE II SUBUNIT GAMMA, PUTATIVE (DUF3741)-RELATED 1 837 - -
Tsu01g02575 837 PANTHER DUF3741 FAMILY PROTEIN 1 837 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g02575 Tsu-Chr1 28678703 28683126 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g02575 1 835 TRM (TON1 Recruiting Motif) Superfamily AT4G28760 35.826 2.18e-124 395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g02575 - - mtr:MTR_1g069190 1237.25
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g02575 01 28678703 28683126 Tsu01g02575 01 28678703 28683126 ECH
Tsu07g03773 07 43964533 43970146 Tsu01g02575 01 28678703 28683126 PCT