Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g02565 ATGAATCACTGTGTTCCAGATTTCGATATTCATCATATCGATGACGATGATGATTATCCTCTCAATCTCTCAAAGAAATCTTCAACGCAAGCTGATGAGATCATGGAACTGATATGGCAAAACGGTCAAGTTGTGATGCAAAGCCAAAACCACCGCCAATTCAGAAAATCGCCATCGCCGGCAACGAACAACACCGGCGGCAATCGCGTGATTCCTGATCATAAAGTGATTCGATCTTCTGATGCAGAGAATTACAATATTAATCAAAACTTGTTCATGCAAGAAGACGAAATGGCTTCGTGGCTTTTCGATTCGATGAATGATGATCCTCCTTTCAACCGTCAAGATTTCAGCACAGAAACACTTTTTCATCCATCCGCCGGTGAGAAAAACGGTGGTGCTGTTATACAAGCAGCTGTTCCTGAGCCGGAGTTTCATCAGCAAATGAGACCGGCATTGGCGGCGGCTTCTCGGCCTCCAATTCACCCGGTGAGGAAGCCGGAACAGGATGTGAATAGGAGGCATAATTTCTCATATTTTACTAACCATGGTAATGTGAGGAAAGAACCAGGTGCTTCGTCGATTTCCATTATTGCGGCGGGGAGGGAATCAACGGTGGTGGATTCATGTGATACGCCCATCTTGACGGCAAAGACCTATGCGGCTTCTAGATTATCGGAAACTATAAGGAGCACGGCAGAAACTGGATTTGTTAGTGTGAGTACATGCGGAAAAGCAGCTTCATGGAACGACAAAAGGGAGACTACGACGACGATTGATACGACAGTGATGTCATTGCCTGACTGTTGTTCAAGTGGAAGTGGTAAACCAGATCAGAGAAAATCAGACTTAGACAAAAAAAGGAAACATCCTGAACAGGAGGACTCTGAGTTTCATAGTGAGGATATTGATTTTGAACatcaagaaggaaaaaaacaagTCCGTGGATCTACATCATCTACAAAGAGATCCCGTGCCGCGGAGGTTCATAATCTCTCTGAGAGGAAGCGTCGAGATAGGATCAACGAAAAGATGAAAGCTTTGCAAGAACTTATACCACGGTGCAACAAGTCTGACAAAGCTTCAATGTTGGATGAAGCAATTGAATACTTGAAGTCATTGCAGATGCAAGTGCAGATGATGTCCATGGGATGTGGCATGGTACCTATGATGTATCCTGGAATACAACGGTTTATGCCGACGATGGGAATGAGTTTGGGGATGGAAATGGGAATGGGAATGGGAATGAACAGACCAGTGATGCCATTTCCTAACATGTTAGCTAGTTCTCCTTTACCAGCACCAACAGTAGGTGCTCAATTTAGACCAAGGTTTGGTATGCCTCCTTTCAATATGCCCCATGTTCCTGCAGCACCTGATTTAACCAGAATGCAACCAGAAAATCAATCAGATAGCACCCTTAACTCCCTTGGTACTGTGCCTCCAGACCCAAACTTCACCGATCCTTACCAGCAATACCTTGGTCCACACCAGATGCAGCAATTAATGCAGGCAATGAACCAGCAAAATGTCAACAGACCAGGTACCAGTGGGAACCAAGATAATAATCCACAAAAGCATCATCAGTCAGGTTAG 1596 0.4424 MNHCVPDFDIHHIDDDDDYPLNLSKKSSTQADEIMELIWQNGQVVMQSQNHRQFRKSPSPATNNTGGNRVIPDHKVIRSSDAENYNINQNLFMQEDEMASWLFDSMNDDPPFNRQDFSTETLFHPSAGEKNGGAVIQAAVPEPEFHQQMRPALAAASRPPIHPVRKPEQDVNRRHNFSYFTNHGNVRKEPGASSISIIAAGRESTVVDSCDTPILTAKTYAASRLSETIRSTAETGFVSVSTCGKAASWNDKRETTTTIDTTVMSLPDCCSSGSGKPDQRKSDLDKKRKHPEQEDSEFHSEDIDFEHQEGKKQVRGSTSSTKRSRAAEVHNLSERKRRDRINEKMKALQELIPRCNKSDKASMLDEAIEYLKSLQMQVQMMSMGCGMVPMMYPGIQRFMPTMGMSLGMEMGMGMGMNRPVMPFPNMLASSPLPAPTVGAQFRPRFGMPPFNMPHVPAAPDLTRMQPENQSDSTLNSLGTVPPDPNFTDPYQQYLGPHQMQQLMQAMNQQNVNRPGTSGNQDNNPQKHHQSG 531
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g02565 531 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 323 392 IPR036638 GO:0046983
Tsu01g02565 531 Coils Coil 331 351 - -
Tsu01g02565 531 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 325 374 IPR011598 GO:0046983
Tsu01g02565 531 MobiDBLite consensus disorder prediction 266 339 - -
Tsu01g02565 531 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 1 528 IPR031066 -
Tsu01g02565 531 MobiDBLite consensus disorder prediction 490 531 - -
Tsu01g02565 531 CDD bHLH_AtPIF_like 325 388 - -
Tsu01g02565 531 MobiDBLite consensus disorder prediction 50 70 - -
Tsu01g02565 531 PANTHER TRANSCRIPTION FACTOR BHLH FAMILY-RELATED 1 528 - -
Tsu01g02565 531 MobiDBLite consensus disorder prediction 278 313 - -
Tsu01g02565 531 Pfam Helix-loop-helix DNA-binding domain 329 375 IPR011598 GO:0046983
Tsu01g02565 531 MobiDBLite consensus disorder prediction 464 483 - -
Tsu01g02565 531 Gene3D - 320 383 IPR036638 GO:0046983
Tsu01g02565 531 MobiDBLite consensus disorder prediction 50 69 - -
Tsu01g02565 531 SMART finulus 331 380 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g02565 Tsu-Chr1 28433664 28442076 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g02565 1 380 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G20180 39.949 3.04e-61 203
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Tsu01g02565 HLH 8.3e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g02565 - - mtr:MTR_1g069155 701.819
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g02565 01 28433664 28442076 Tsu01g02565 01 28433664 28442076 ECH
Tsu07g03776 07 44026303 44029583 Tsu01g02565 01 28433664 28442076 PCT