Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g02554 ATGGCGGCATCACGGCGGCTCCGGGAGCTACAATCCCAACCAGGAAACAAGATCTGCGTTGATTGCTCTCAGAAGAATCCACAGTGGGCATCAGTATCCTATGGCATCTTCATGTGTCTGGAATGCTCCGGTAAACACCGTGGCCTCGGCGTTCACATCTCCTTCGTCCGATCCGTTACCATGGATGCTTGGTCcgaaatccaaataaaaaaaatggaagctGGTGGTAACGATAATCTCAACGCTTTCCTTGCTCGCTATTCAATTCCTAAGGAAACCGATATCGTTACAAAGTATAACACCAACGCCGCTTCCGTTTACCGTGACAGGATCCAAGCTATGGCAGAAGGTCGTCCATGGCGCGATCCGCCTGTTGTTAAGGAGAATTTTGGTTCCAAGGGGAGGCCGCCGCTGTCACAGTCACAGAATCGTCGAAATAACGATTCCGCTTGGGATGATTGGGATGGAGAAGAAAATTCTGGAAGTTCCGTCGATGTAAGGAGTAAGTCGACTGGGGATTTCAGAAGCTTGAACGGCGGTGGAGCGCCGGTGAGATCGAGGTCAACCGAGGATATTTACACGCGGTCGCAGTTGGAGGCTTCTGCGGCGAATAAGGAGGGATTTTTCGCGAAGAAGATGGCGGAGAATGAATCGAAACCGGAAGGACTTCCGCCGTCGCAAGGTGGGAAGTATGTTGGGTTTGGATCCAGTCCTGCACCTTCACAAAGGAGTAATCCGCAAAACGACTATCTCTCTGTTGTTTCGCAGGGGATTGGTAAGTTATCACTAGTTGCTGCTTCTGCTGCTAATGTTGTTCAGGCTAGCACTAAAGATATCACTTCTAAGGTCAAGGAAGGTGGTTATGATCAAAAGGTCAACGAAACTGTCAGCGTTGTCACTCAAAAGACATCAGAGATTGGTCAAAGGACATGGGGTATAATGAAAGGGGTCATGGCTTTGGCTTCACAGAAGGTTGAGGAGTTCACTAAAGAGAACTCAAATTCGACTACAAATAACTGGCAACGAAATGAGAATGATAGAAATGGCTACTATCAAGATTTCAATCAAGGGAACAAAGGCATTAATTCTTCTACCGGAAGAGAACAATCTTCATCAGGACAATTCAAAACTCATAGCTCAAACTCTTGGGATGATTGGGACCACAAAGATAGTTGGAAGGAAGGACCAACTAAAGGATCAACTCCTTATTCATCTGGTGGTCAGTCTGGTACTCACAATCCAAGCTCTTGGGATGATTGGGACCAAAAAGATTCTAGGAAGGAAGAACCAGCTAAAGGATCGGCTCCCCATAATAATGATGCTGGTTGGGCTGGCTGGGATAATGCCAAGGATGATGGATTCGATAACTTTTATGATGGTACATCTAATAAGAAACCTGTTGGACATAATGGGAAATCAGATGATGCTTGGACGGGGGGTGGCTTTCTCTAA 1452 0.4607 MAASRRLRELQSQPGNKICVDCSQKNPQWASVSYGIFMCLECSGKHRGLGVHISFVRSVTMDAWSEIQIKKMEAGGNDNLNAFLARYSIPKETDIVTKYNTNAASVYRDRIQAMAEGRPWRDPPVVKENFGSKGRPPLSQSQNRRNNDSAWDDWDGEENSGSSVDVRSKSTGDFRSLNGGGAPVRSRSTEDIYTRSQLEASAANKEGFFAKKMAENESKPEGLPPSQGGKYVGFGSSPAPSQRSNPQNDYLSVVSQGIGKLSLVAASAANVVQASTKDITSKVKEGGYDQKVNETVSVVTQKTSEIGQRTWGIMKGVMALASQKVEEFTKENSNSTTNNWQRNENDRNGYYQDFNQGNKGINSSTGREQSSSGQFKTHSSNSWDDWDHKDSWKEGPTKGSTPYSSGGQSGTHNPSSWDDWDQKDSRKEEPAKGSAPHNNDAGWAGWDNAKDDGFDNFYDGTSNKKPVGHNGKSDDAWTGGGFL 483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g02554 483 ProSiteProfiles ARF GTPase-activating proteins domain profile. 4 120 IPR001164 GO:0005096
Tsu01g02554 483 MobiDBLite consensus disorder prediction 328 380 - -
Tsu01g02554 483 MobiDBLite consensus disorder prediction 161 175 - -
Tsu01g02554 483 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD6-RELATED 1 404 IPR044519 GO:0005096|GO:0016192
Tsu01g02554 483 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD6-RELATED 402 483 IPR044519 GO:0005096|GO:0016192
Tsu01g02554 483 CDD ArfGap_ArfGap1 3 117 - -
Tsu01g02554 483 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD6-RELATED 402 483 - -
Tsu01g02554 483 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD6-RELATED 1 404 - -
Tsu01g02554 483 SUPERFAMILY ArfGap/RecO-like zinc finger 5 113 IPR037278 -
Tsu01g02554 483 MobiDBLite consensus disorder prediction 328 483 - -
Tsu01g02554 483 Pfam Putative GTPase activating protein for Arf 5 105 IPR001164 GO:0005096
Tsu01g02554 483 MobiDBLite consensus disorder prediction 381 395 - -
Tsu01g02554 483 MobiDBLite consensus disorder prediction 397 416 - -
Tsu01g02554 483 MobiDBLite consensus disorder prediction 215 248 - -
Tsu01g02554 483 SMART arf_gap_3 4 120 IPR001164 GO:0005096
Tsu01g02554 483 PRINTS HIV Rev interacting protein signature 16 35 IPR001164 GO:0005096
Tsu01g02554 483 PRINTS HIV Rev interacting protein signature 35 52 IPR001164 GO:0005096
Tsu01g02554 483 PRINTS HIV Rev interacting protein signature 56 77 IPR001164 GO:0005096
Tsu01g02554 483 MobiDBLite consensus disorder prediction 118 191 - -
Tsu01g02554 483 MobiDBLite consensus disorder prediction 417 434 - -
Tsu01g02554 483 Gene3D Arf GTPase activating protein 1 125 IPR038508 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g02554 Tsu-Chr1 28276685 28280463 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g02554 5 87 C2H2 Transcription Factor Family AT4G05330 47.619 3.71e-22 95.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g02554 K12492 - gmx:100806519 782.326
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g02554 01 28276685 28280463 Tsu01g02554 01 28276685 28280463 ECH
Tsu07g03792 07 44165575 44171038 Tsu01g02554 01 28276685 28280463 PCT