Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g02548 atgggAGAAGAAGTTGTTTGTTTGCAAGCATTGGAAGATGGAAGAACGGAAAATAAAGAGGAATCGAAGACGGAACTGAAACGTGACTATAACCAATGTGTTGCTGATACTGAAGCAGATGTTTCTcccaataaaaaacaaacaaaagaagtTTCAAATGATGAAGTGCGCTCTGAAGTTACAAATCCCAACGTTTCTGCAACAGAGCATGCACTAACCTTTCATGATATTAGTAGCCAACCCACAGAATCGGAAAATGTTAACCATGCAGAGTGTGGGGAACTTACATCTACTTGTTTGGAAAATTCCAGTTCCCATGATACTGTGAGTGATGAAGCCGGTGCTCggaataatgataatgataataacaaTACTGCTTCTCCGAATGATAAAAGTACGGATAGCAACGATGCAGTGATGTCCCGTGTTGTGATGGAAATCCCGAAGCATGCTAGTTCAACTGGTATTAGAAAGATTACTTTTAAGTTCAGTAAAAAGAAGGAGGACTATGATAATGATTATCAAACACCTGCTGGCTATACTGATGGCAATGGTTATGGCTATGGCTATGGCTATCACGGGGATGATGAATATTTGGCAAAGGATGATTCTAATAGTGGGTTTTTAGAGACCTCATATGGCACGGGATATGTTCCTTATGAAGATTCAGATTTGTATTCTGGAAATATGGAATTGAAAATGTCAAAGAAAGTCGTCCCTAACAGCTTCCCCACAAATGTCAAAAAGCTGttatcaactggtatccttgaTGGAGCtgcagtaaaatatatttacaatccCGGAAAGGTTGAGCTCGATGGGATTATTGGTGGCGGTGGATATTTGTGTGGCTGTTCAATGTGCAGTTACTCTAGAGTGCTCAGTGCCTATGAGTTTGAGCAGCATGCTGGTGCTAAGACTAGACATCCAAATAATCATATATTCCTAGAAAATGGAAAACCAATTTATAGCATCATACACGAAATAAAAACTGCTGCAAACAGCATGCCAGATGAGATTATAAAGAATGTGGCTGGTTCATCTATCAACGAGGAATCCTTCCAGGTTTGGAAAGAAAGTCTCCTACAAAGCAACAGGAAGGTTCCAACTCATAAAAACTACAGTACAAAGTTTACTGGCACACGTCATACACACAACAGTCAATCTATAGAAAGTGGGAGCCACTTCTCATCTTCACGTGCGCGAAATCATTTTGAGCAGCAAATGTATGTGAACCAGACAACTGATGAGTGGAAAAGAGTGGTGAAGAAGCCAAGCACGTACACTTACAACTCAGGTATACCGCAGAAGAGAAGTGCTGATGGTTGCACTAAGAAAAGgGACAATGATTTGCACAGGTTACTTTTTATGCCAAATGGCCTACCAGACGGTGCTGAGTTGGCTTACTATGTCAAAGGACAGAAACTACTTGGAGGTTACAAACAGGGAAATGGTATAGTCTGTGGTTGTTGTGATGTAGAGATAAGCCCTTCACAGTTTGAAGCCCATGCTGGAATGGCGGCTAGACGTCAACCTTACCGCCACATATATACTTCCAATGGATTGACACTTCATGATATTGCTCTCTCTTTGGCAAATGGTCAAAACCTTACTACGGGAGATAGTGATGATATGTGTGCAATATGTGGAGATGGAGGAGATTTGATTCTTTGCAATGGATGTCCTAGAGCCTTTCATGCAGCCTGCTTAGGATTACACAGTGTACCAGATAGTGGTTGGCATTGTCTAAATTGTAAAGATATTACTGGTGACGGAAGAGGTGTGAGGCCAATCATGATTCGGTTGACACGGGTTGATAAAGAACCAGAATATGAAATGGGTGGATGTGTTGTTTGCAGGGAAAATGATTTCAGTGTTGATACATTTGATGACCGAACAGTAATAATTTGTGATCAGTGTGAGAAGGAGTATCATGTTGGTTGCTTGCGGGACATTGGGCTATGTGAGTTGGAAGAGCTTCCAAAGGATAAGTGGTTTTGTTGCGACGACTGTAATAGAATATATGTGGCTCTACAGAATTCAGTTTCTGCTGGAGCAGATACAATACCATCTTCCTTGTCTGAACTAATAATTAGGAAGCACAAAGAGAGGGGATTATGTACGTATGGAAGCATGAATGATATTCAGTGGAGAATTTTAAGTGGAAAAAGTCGTTATCCCGAGCATTTACCGTTACTTTCACGAGCTGCTGCAATTTTTCGAGAGTGTTTTGATCCCATTGTTGCAATATCTGGTCGTGACCTGATTCCTGTTATGGTCTATGGGAGAAATATTTCTGGCCAAGAATTCGGGGGAATGTATTGCATTGTTTTAATTGTGAATTCTGTCGTAGTATCTGCCGGGCTTCTTAGGATTTTTGGCTGCAACATTGCTGAGCTTCCCCTGGTTGCTACAAGTAGAGAGCATCAAGGAAAAGGTTATTTTCAAGTGCTGTTCTCTTGCATAGAGAGGTTGTTGTCTTCTCTAAATGTAGAAAAGCTGGTGCTCCCTGCTGCAGGGGATGCAGAATCAATTTGGACTAAGAAATTAGGCTTTCACAAGATGAGTGAAGATCAGGTAAAGTTCATCTTCTACATTTTACTGGTTAACTAG 2613 0.3972 MGEEVVCLQALEDGRTENKEESKTELKRDYNQCVADTEADVSPNKKQTKEVSNDEVRSEVTNPNVSATEHALTFHDISSQPTESENVNHAECGELTSTCLENSSSHDTVSDEAGARNNDNDNNNTASPNDKSTDSNDAVMSRVVMEIPKHASSTGIRKITFKFSKKKEDYDNDYQTPAGYTDGNGYGYGYGYHGDDEYLAKDDSNSGFLETSYGTGYVPYEDSDLYSGNMELKMSKKVVPNSFPTNVKKLLSTGILDGAAVKYIYNPGKVELDGIIGGGGYLCGCSMCSYSRVLSAYEFEQHAGAKTRHPNNHIFLENGKPIYSIIHEIKTAANSMPDEIIKNVAGSSINEESFQVWKESLLQSNRKVPTHKNYSTKFTGTRHTHNSQSIESGSHFSSSRARNHFEQQMYVNQTTDEWKRVVKKPSTYTYNSGIPQKRSADGCTKKRDNDLHRLLFMPNGLPDGAELAYYVKGQKLLGGYKQGNGIVCGCCDVEISPSQFEAHAGMAARRQPYRHIYTSNGLTLHDIALSLANGQNLTTGDSDDMCAICGDGGDLILCNGCPRAFHAACLGLHSVPDSGWHCLNCKDITGDGRGVRPIMIRLTRVDKEPEYEMGGCVVCRENDFSVDTFDDRTVIICDQCEKEYHVGCLRDIGLCELEELPKDKWFCCDDCNRIYVALQNSVSAGADTIPSSLSELIIRKHKERGLCTYGSMNDIQWRILSGKSRYPEHLPLLSRAAAIFRECFDPIVAISGRDLIPVMVYGRNISGQEFGGMYCIVLIVNSVVVSAGLLRIFGCNIAELPLVATSREHQGKGYFQVLFSCIERLLSSLNVEKLVLPAAGDAESIWTKKLGFHKMSEDQVKFIFYILLVN 870
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g02548 870 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 613 674 IPR013083 -
Tsu01g02548 870 MobiDBLite consensus disorder prediction 101 137 - -
Tsu01g02548 870 CDD PHD1_AIRE 545 585 - -
Tsu01g02548 870 MobiDBLite consensus disorder prediction 1 69 - -
Tsu01g02548 870 ProSiteProfiles Zinc finger PHD-type profile. 613 674 IPR019787 -
Tsu01g02548 870 PANTHER ACYL-COA N-ACYLTRANSFERASE WITH RING/FYVE/PHD-TYPE ZINC FINGER DOMAIN-CONTAINING PROTEIN 5 861 - -
Tsu01g02548 870 Pfam Tify domain binding domain 479 528 IPR032308 -
Tsu01g02548 870 Pfam Tify domain binding domain 274 325 IPR032308 -
Tsu01g02548 870 ProSitePatterns Zinc finger PHD-type signature. 546 585 IPR019786 -
Tsu01g02548 870 MobiDBLite consensus disorder prediction 372 397 - -
Tsu01g02548 870 Pfam PHD-finger 545 586 IPR019787 -
Tsu01g02548 870 Gene3D - 713 866 - -
Tsu01g02548 870 PANTHER AUTOIMMUNE REGULATOR 5 861 - -
Tsu01g02548 870 SUPERFAMILY FYVE/PHD zinc finger 611 669 IPR011011 -
Tsu01g02548 870 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 771 857 IPR016181 -
Tsu01g02548 870 SMART PHD_3 615 672 IPR001965 -
Tsu01g02548 870 SMART PHD_3 545 586 IPR001965 -
Tsu01g02548 870 MobiDBLite consensus disorder prediction 13 34 - -
Tsu01g02548 870 MobiDBLite consensus disorder prediction 42 56 - -
Tsu01g02548 870 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 533 605 IPR013083 -
Tsu01g02548 870 ProSiteProfiles Zinc finger PHD-type profile. 543 588 IPR019787 -
Tsu01g02548 870 SUPERFAMILY FYVE/PHD zinc finger 541 586 IPR011011 -
Tsu01g02548 870 ProSitePatterns Zinc finger PHD-type signature. 616 671 IPR019786 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g02548 Tsu-Chr1 28145928 28155959 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g02548 1 861 PHD Transcription Factor Family AT3G53680 51.919 0.0 868
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Tsu01g02548 TDBD 2.9e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g02548 - - gmx:100808999 1415.98
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g02548 01 28145928 28155959 Tsu01g02548 01 28145928 28155959 ECH