Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g02537 ATGGAGAACCACAAAACACAAACTTGGTTAGAAATGGCAACACCGTTCATAGCTATCTTGTCTTTGCAGTTAGGATATGCAGTTATGGATGTTTTATCAAAGGCTGCATTAAATGAAGGAATGAGCAACTACGTTTTTGTTGTGTACCGCCATGCCATTGCATTCATTGTCATAACTCCTTTTGCACTCTATTTTGACAAGAAAGTAAGGCCGAAAATGACAATTTCAATCTTCATCAAGATAGCGGCACTCAGTTTGTTAGAGCCAGTTATTGATCAGAATTTGTATTTTTTGGGGATGAAATATACAACAGCAACCTTTGCAGCTGCTATGAGCAATATGCTTCCTGCTATTACCTTTATATTAGCTTCAATTCTTAAGCTTgagaaaataaagataaaaagtaTACGAAGCCAAGCAAAGATATTGGGAACAATAGCTACGGTTACAGGTGCCATGGTGATGACATTAGTCAAAGGGCCAATACTTTTAGAAACATTCGGAGGCAAAAGCCACATCCATCATAGTGGGGGTACAATAAGTAATCAACATACAATACTTGGATCTGTATTGATCACCATAGGATGCTTCAGTTGGGCTTGTTTTTTTAACCTTCAAGCTATTACCCTTGAAGCCTACCCTGCAGCACTCTCTCTTTCGTCATGGATATGCCTATTGGGCACAATTGAAGGTGCAGCTGTGGCTTCAATAATGGAATGGGGTCGTCCCTCCGTTTGGTCCATAAAATGGGATATGAGATTGTTGTCTACTCTTTATACgGGCATATTCTGCTCAGGTCTAGCTTATTACTTGCAAGGAGTAGTGATGAAAGCTAGAGGTCCAGTGTTTGTCACAGCATTCAGTCCCTTATGTATGGTGATTGTTGCTATCATGGGATACTTCCTTCTCGCAGAGCAAATGTTTCTCGGAAGAGTGATAGGTGCATTTATCATTTGTTTGGGCTTGTACCTTGTTGTGTGGGGAAAAAGCAAAGATtacaataacacatcaaattcaattattgaagAGCCTGTTTTACCGACTAAACAAACTGCTGGTGAAAATTGTACTCAATCATTCAGAGAGGTGAAGAAAAAAGATCGTAAGGCACTATTTTTGATACATCAATGTGTTGATTCAACAAATTTTGAGAAGATTTCTTCTGCAACTAGTTCCAAACAGGCTTGGGACATACTCAACAATGCACATGGAGGAGGTGATAAAGTGAAGAAGGTTAGGCTTCAATCACTCCGTAGGCAATATGAGTTGTTGGGAATGATGGATAAGGAATCCATTGGTGATTTCTTCACAAGGTTGCAGACATTGGTCAATACAATGAAGAATCTTGGAGATCAAATCTCTGATCAACAAGTCATTGAGAAGGTTTTGAGAACATTAAACCCTCAATTTGATCATATTGTAGTGGCCATTGAGGAATCAAAGGATTTGTCAACAATGTCTCTAAATGAGTTACAGAGTTCTCTGGAGGCACATGAACAAAGGCTGAAAGAAAGGAAAGATTCAAAGAATCAGCAAGAACAAGCATTGTATGCAAGGAATGGAAGCAAAAATGGTAAAGGCAAAGGCAAATGGAAGAATGAAAAGTATAAGGGAAAATCAGAATCCAGTTATGACCAAGATCATGACAATGGTGATCAAAGTCAAAGTGAATCTTCTATGAAGAATAAGAATCAGGGAAAGAAAGACAAAAGCAAGATAAAATGCTTTTGCTGTAACAAATGGGGTCACTATGCCTCTGAATGTCAAAACAAGGGCAAAAAGAAACAAGAAGAAGCAAATCATGCCAGGCAAAATCACACTGATTCAGATGGTGTTCTGCTTATGGTCACCACCAACACTTCAGaggctcagagaagttcagaagctcaaagatgttcagatgcctacaagagttcagaagcaatctgctag 1932 0.367 MENHKTQTWLEMATPFIAILSLQLGYAVMDVLSKAALNEGMSNYVFVVYRHAIAFIVITPFALYFDKKVRPKMTISIFIKIAALSLLEPVIDQNLYFLGMKYTTATFAAAMSNMLPAITFILASILKLEKIKIKSIRSQAKILGTIATVTGAMVMTLVKGPILLETFGGKSHIHHSGGTISNQHTILGSVLITIGCFSWACFFNLQAITLEAYPAALSLSSWICLLGTIEGAAVASIMEWGRPSVWSIKWDMRLLSTLYTGIFCSGLAYYLQGVVMKARGPVFVTAFSPLCMVIVAIMGYFLLAEQMFLGRVIGAFIICLGLYLVVWGKSKDYNNTSNSIIEEPVLPTKQTAGENCTQSFREVKKKDRKALFLIHQCVDSTNFEKISSATSSKQAWDILNNAHGGGDKVKKVRLQSLRRQYELLGMMDKESIGDFFTRLQTLVNTMKNLGDQISDQQVIEKVLRTLNPQFDHIVVAIEESKDLSTMSLNELQSSLEAHEQRLKERKDSKNQQEQALYARNGSKNGKGKGKWKNEKYKGKSESSYDQDHDNGDQSQSESSMKNKNQGKKDKSKIKCFCCNKWGHYASECQNKGKKKQEEANHARQNHTDSDGVLLMVTTNTSEAQRSSEAQRCSDAYKSSEAIC 643
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g02537 643 Pfam gag-polypeptide of LTR copia-type 364 504 - -
Tsu01g02537 643 ProSiteProfiles Zinc finger CCHC-type profile. 574 590 IPR001878 GO:0003676|GO:0008270
Tsu01g02537 643 SUPERFAMILY Retrovirus zinc finger-like domains 556 596 IPR036875 GO:0003676|GO:0008270
Tsu01g02537 643 Pfam EamA-like transporter family 17 154 IPR000620 GO:0016020|GO:0016021
Tsu01g02537 643 Pfam EamA-like transporter family 187 326 IPR000620 GO:0016020|GO:0016021
Tsu01g02537 643 MobiDBLite consensus disorder prediction 498 512 - -
Tsu01g02537 643 SUPERFAMILY Multidrug resistance efflux transporter EmrE 245 331 - -
Tsu01g02537 643 Coils Coil 488 515 - -
Tsu01g02537 643 MobiDBLite consensus disorder prediction 498 566 - -
Tsu01g02537 643 PANTHER WAT1-RELATED PROTEIN 10 351 - -
Tsu01g02537 643 MobiDBLite consensus disorder prediction 527 554 - -
Tsu01g02537 643 PANTHER WAT1-RELATED PROTEIN 10 351 IPR030184 GO:0016021|GO:0022857
Tsu01g02537 643 SUPERFAMILY Multidrug resistance efflux transporter EmrE 49 156 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g02537 Tsu-Chr1 27981717 27990038 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g02537 1 355 Nodulin-like Gene Family AT2G37460 62.360 1.56e-158 459
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g02537 - - cam:101496299 553.518
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g02537 01 27981717 27990038 Tsu01g02537 01 27981717 27990038 ECH
Tsu07g03804 07 44317950 44320933 Tsu01g02537 01 27981717 27990038 PCT