Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g02525 ATGAGACTATTTTGCTTGAATCCTAAAACGCCATCGTTTTCAATACACCGAAACACTTCACCATCTTCAACTTCAAGTTCATCCTCCACTACCATACCGTCAATCAGAAAAGCTACAGTACGCATAGAAGCAGCAGAAGCACTTATCCTAAAATGGAACTCCGAAACTTCCGATTATGCCAAAGTAACTTCTCTCTTCTACGACGACAAAATCAAAGCAATTCAATATATTCACAGCTTAAAAAACCTTCAAAAAGCAATGCATTCATTACTCAAACTCGATCCATCGTCTCCAAAACTCATCAAAGCTCAAAACCTAATGCAAATTGCCATGAAAAGGCTCCAAAAAGAGTTCTACCAGATATTATCCATGAACCGAGCCTACTTAGACTCTGAATCCGTTTCTGTCAGATCATCTAGCACTAGCACTTCCTTATCCGTCGGAGAAGCTTGTTTTGCTGAGATTTCTAGAAATGGAGCTACTCTGCTTCTCCGATTTCCTGAATTTGTTGCCAAAACAAAGAAATCGACGCAGGAGAAGATTTTCAGTTTGCTCCATATGTACACCGCAATCACGGTTTTGTTGCCAGAGATTGAATTGATCTTCTCGTTCAATTCAACCTCCGGTATTAAATCTCAAGCATATGATTCGAAAAATCGATTAATGGAGTCTGTCAGAAATATTTTCTCCGAATTTGAGTACGCAATCTTGAAGGATTCTTCCAAATCTGTGGCAAATTTCGGCGGTGTTCATTCCCTTACAAAGCAAACAATGCAGTACCTAACTAGTCTTGCAGATTATAGCAATGTGCTTTCTGAAATATTCTTGGATGTTCCTCCGTCGTCAAAGTTTCCGTTGTCGGAATCTTACTTATCTAGTCCAGAATTATCCAACAACGTGACAGAAAACGCGACGCGATTTTCTGTTCAAATGATGAGGTTGATTCTGA 949 0.3941 MRLFCLNPKTPSFSIHRNTSPSSTSSSSSTTIPSIRKATVRIEAAEALILKWNSETSDYAKVTSLFYDDKIKAIQYIHSLKNLQKAMHSLLKLDPSSPKLIKAQNLMQIAMKRLQKEFYQILSMNRAYLDSESVSVRSSSTSTSLSVGEACFAEISRNGATLLLRFPEFVAKTKKSTQEKIFSLLHMYTAITVLLPEIELIFSFNSTSGIKSQAYDSKNRLMESVRNIFSEFEYAILKDSSKSVANFGGVHSLTKQTMQYLTSLADYSNVLSEIFLDVPPSSKFPLSESYLSSPELSNNVTENATRFSVQMMRLIL 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g02525 316 Gene3D Exocyst complex component Exo70 43 142 - -
Tsu01g02525 316 PANTHER EXOCYST SUBUNIT EXO70 FAMILY PROTEIN 146 316 - -
Tsu01g02525 316 SUPERFAMILY Cullin repeat-like 42 315 IPR016159 -
Tsu01g02525 316 PANTHER EXOCYST SUBUNIT EXO70 FAMILY PROTEIN 1 147 - -
Tsu01g02525 316 Gene3D Exocyst complex component Exo70 143 316 - -
Tsu01g02525 316 PANTHER EXOCYST COMPLEX PROTEIN EXO70 1 147 IPR004140 GO:0000145|GO:0006887
Tsu01g02525 316 PANTHER EXOCYST COMPLEX PROTEIN EXO70 146 316 IPR004140 GO:0000145|GO:0006887
Tsu01g02525 316 Pfam Exo70 exocyst complex subunit 144 315 IPR046364 GO:0000145|GO:0005546|GO:0006887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g02525 Tsu-Chr1 27733328 27734759 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g02525 142 316 EXO70 exocyst subunit family AT3G55150 44.000 1.42e-35 134
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g02525 K07195 - gmx:100798477 194.897