Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g02520 ATGATCGTGCAAAACAGAGAATCCTTCCATTCCAGTATAAGGGACTCCCTAGATTTGGTACCTATTGGTGCTTTCCATGGTCGTGGTAAACGAACAGGAGTGTATGATGTTTATCTCGTTGCTTGCTATGACAAAGAGAACGAAGAATTTCAAACAACTGGATTCGCAGAAGTGGATCTTGAAAAACTTTCTGCTATCCTTCGCTCTAAAATTATTCCCAAACCAAAGGCATATTCTAAATGTGGAGAATCAATCAATCGTGATGTCTGGTTTGAAGATACTGAGGGCATATCTCTTCGGTTTCCACGTTTTGTTCGAGTTCGGCCGGACAAAGCTCCTGATCAGGCCACTCCGTCTGAGCAGATTAAGAATGCTGAAATGTATAATAAGCAAAAACACAACCACACCAACAACTAG 417 0.4149 MIVQNRESFHSSIRDSLDLVPIGAFHGRGKRTGVYDVYLVACYDKENEEFQTTGFAEVDLEKLSAILRSKIIPKPKAYSKCGESINRDVWFEDTEGISLRFPRFVRVRPDKAPDQATPSEQIKNAEMYNKQKHNHTNN 138
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g02520 138 Pfam ATP dependent DNA ligase C terminal region 31 111 IPR012309 GO:0003910|GO:0006281|GO:0006310
Tsu01g02520 138 MobiDBLite consensus disorder prediction 110 138 - -
Tsu01g02520 138 Gene3D - 94 138 IPR012340 -
Tsu01g02520 138 PANTHER DNA LIGASE 1/3 FAMILY MEMBER 12 137 - -
Tsu01g02520 138 Gene3D - 15 93 IPR012340 -
Tsu01g02520 138 SUPERFAMILY Nucleic acid-binding proteins 15 124 IPR012340 -
Tsu01g02520 138 PANTHER DNA LIGASE 1 12 137 - -
Tsu01g02520 138 ProSiteProfiles ATP-dependent DNA ligase family profile. 1 44 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Tsu01g02520 138 MobiDBLite consensus disorder prediction 117 138 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g02520 Tsu-Chr1 27588438 27590325 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g02520 6 138 Core DNA Replication Machinery Family AT1G08130 48.780 6.25e-45 154
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g02520 K10747 - gmx:100803989 182.956