Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g02511 ATGGAAGAAACAACATCAACAATCATGCTAGCACTTTCATCTCTAACACCTTCCCATCTCACTCATCTCACAAACTCCATTCACTCAACCACCCGCCGCCACCACCGCCGTCTCACTTTCCTCCTTTCTTCCccatctctcttctctcttacCCTTCACCATCTCCACAAACTCTCTCTCTCCCAAAAAACTCTCCTCATTTCACGCCACCTTCTTTCCTCTCTACACCTCCTCACTCAATCCACCTCACCTCTTCCACCTCCTGTTTCAACCATCATGAGAGAACGTGAAATCGACGCGGTTTTGCTTCTTCTCCTTTTCTGTGAAACACATAAACACAACCCAGAAGCTCTAAACGCACCGTTTTTTCATTGGAGATTGAATTTGAGTAAAAGCTTCTCTAACACGTTATTGATGATGTCTTGTTCTTCTGCTCCACCGCTTGGGGGATGTTTGGGATCTGTTTTGATTCCGTTTATTGAGACGGTGAGTCGGTGTTGGAGATTGGTGGGTGTTTTGGGTTGTGAAGAAGGGAAGGAAGTTAAGGAAGTGGCAGCTTCGGCGGCGACGGTGGTTTCTTTACCGGCGGTGGAAGTGAGTGTGGGCGGGAGAGAGTGTGTGATCTGTAAAGAGGAGATGCGAGTGGGGAGAGACGTGTGTGAATTGCCATGTCAGCATTTGTTTCATTGGATGTGTATTTTGCCGTGGTTGGGGAAGAGAAACACGTGTCCTTGTTGCAGGTTTCGGTTACCGTCCGATGATGTTTTTGGTGAGATCCAACGGCTTTGGGAAATCTTGATTAAAATGGGTGTTAAACAACATAATAGGATTTGA 834 0.4556 MEETTSTIMLALSSLTPSHLTHLTNSIHSTTRRHHRRLTFLLSSPSLFSLTLHHLHKLSLSQKTLLISRHLLSSLHLLTQSTSPLPPPVSTIMREREIDAVLLLLLFCETHKHNPEALNAPFFHWRLNLSKSFSNTLLMMSCSSAPPLGGCLGSVLIPFIETVSRCWRLVGVLGCEEGKEVKEVAASAATVVSLPAVEVSVGGRECVICKEEMRVGRDVCELPCQHLFHWMCILPWLGKRNTCPCCRFRLPSDDVFGEIQRLWEILIKMGVKQHNRI 277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g02511 277 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SGR9, AMYLOPLASTIC 2 271 - -
Tsu01g02511 277 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 2 271 - -
Tsu01g02511 277 Pfam Ring finger domain 205 247 IPR001841 -
Tsu01g02511 277 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 197 258 IPR013083 -
Tsu01g02511 277 SUPERFAMILY RING/U-box 200 252 - -
Tsu01g02511 277 ProSiteProfiles Zinc finger RING-type profile. 206 247 IPR001841 -
Tsu01g02511 277 SMART ring_2 206 246 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g02511 Tsu-Chr1 27459066 27460268 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g02511 2 268 C3H Transcription Factor Family AT5G02750 48.387 1.64e-78 238
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g02511 - - pvu:PHAVU_007G161400g 322.783