Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g02508 ATGGTTTTAATTTATGTAGAGGGGGCTTGTGGTTATGGTGATCTTTTCAAACAAGGATATGGGCTTGCAAACACAGCACTAAGCACGGCTCTATTTAATAAAGGATCTACTTGTGGTGCATGTTTTGAGATAACTTGTGTCAATGATCCTCAATGGTGTATAAAGGGTGCAAGGTCAATCATAGTAACTGCAACAAATTTTTGTCCTCCAGATTACTCCAAAACAACAGATGTTTGGTGTAATCCACCACAAAAACACTTTGACTTGAGTTATAAAATGTTCACCTCTATTGCCTATTATAAAGCCGGTGCCATCCCCGTTAAATATCGTCGTGTTCCATGCTCCAAAAGTGGGGGTGTTAGGTTTGAACTCAAAGGAAACCCTAATTTCTTGCTTGTTTTGGTGTATAATGTTGCCAATGCTGGTGATGTCTCTAGTGTGAGTATCAAAGGGTCTAAGACCGGATGGATTCCCATGAAACGCAATTGGGGACAAAAATGGAATACTGGAACACCTTTGGTAGGACAAGTCTTGTCATTTCAAGTTACAACCAGTGATGGAAAAACTATGCAGTTTGATTCAGTTTCTCCTTCCAATTGGCAATTTGGACAGATTTATGAGGGCAAGGGAAATTTTTAG 639 0.3959 MVLIYVEGACGYGDLFKQGYGLANTALSTALFNKGSTCGACFEITCVNDPQWCIKGARSIIVTATNFCPPDYSKTTDVWCNPPQKHFDLSYKMFTSIAYYKAGAIPVKYRRVPCSKSGGVRFELKGNPNFLLVLVYNVANAGDVSSVSIKGSKTGWIPMKRNWGQKWNTGTPLVGQVLSFQVTTSDGKTMQFDSVSPSNWQFGQIYEGKGNF 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g02508 212 PANTHER EXPANSIN-A15 6 212 IPR002963 GO:0009664
Tsu01g02508 212 SUPERFAMILY PHL pollen allergen 116 208 IPR036749 -
Tsu01g02508 212 PANTHER EXPANSIN 6 212 - -
Tsu01g02508 212 Gene3D - 4 115 IPR036908 -
Tsu01g02508 212 SMART dpbb_1 24 109 IPR007112 -
Tsu01g02508 212 PRINTS Expansin signature 130 151 IPR002963 GO:0009664
Tsu01g02508 212 PRINTS Expansin signature 165 186 IPR002963 GO:0009664
Tsu01g02508 212 PRINTS Expansin signature 77 94 IPR002963 GO:0009664
Tsu01g02508 212 PRINTS Expansin signature 60 70 IPR002963 GO:0009664
Tsu01g02508 212 PRINTS Expansin signature 94 107 IPR002963 GO:0009664
Tsu01g02508 212 PRINTS Expansin signature 194 210 IPR002963 GO:0009664
Tsu01g02508 212 PRINTS Expansin signature 46 57 IPR002963 GO:0009664
Tsu01g02508 212 PRINTS Expansin signature 19 33 IPR002963 GO:0009664
Tsu01g02508 212 PRINTS Expansin signature 118 130 IPR002963 GO:0009664
Tsu01g02508 212 SUPERFAMILY Barwin-like endoglucanases 7 137 IPR036908 -
Tsu01g02508 212 Pfam Expansin C-terminal domain 120 197 IPR007117 -
Tsu01g02508 212 PRINTS Expansin/Lol pI family signature 156 170 IPR007118 GO:0005576
Tsu01g02508 212 PRINTS Expansin/Lol pI family signature 28 46 IPR007118 GO:0005576
Tsu01g02508 212 PRINTS Expansin/Lol pI family signature 102 118 IPR007118 GO:0005576
Tsu01g02508 212 PRINTS Expansin/Lol pI family signature 6 24 IPR007118 GO:0005576
Tsu01g02508 212 PRINTS Expansin/Lol pI family signature 194 208 IPR007118 GO:0005576
Tsu01g02508 212 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 129 208 IPR007117 -
Tsu01g02508 212 Gene3D - 119 212 IPR036749 -
Tsu01g02508 212 Pfam Lytic transglycolase 25 109 IPR009009 -
Tsu01g02508 212 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 7 119 IPR007112 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g02508 Tsu-Chr1 27423047 27423685 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g02508 7 212 Expansin Gene Family AT5G39280 66.990 2.04e-105 303
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g02508 - - zju:107415875 345.51