Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g02504 ATGGGTTGGATTCCATGTTCTGGAAGTTCCAACTCtaagaagaagataaagaagaaattGGAGGAAGTGAAGGATATGCGTGATGGGAATAAAGCCAACCCAGagaaattgaagaagaatTCATCTATCAATTCCAAAAATTCCTCTAAAAGTGGAGAGTCTGGACACATTGCTGCACAAACATTTCCTTTCCGTGAGTTAGCAACCGCTACTAGAAATTTTAGAGCAGACTGCCTTTTGGGTGAGGGAGGCTTTGGCAGAGTATACAAAGGGCATTTGGAAACTATTAATCAGATCGTTGCAATTAAGCAACTTGACCGAAATGGGCTACAAGGGAATAGAGAATTCCTTGTTGAAGTGTTGATGCTAAGTCTTCTTCACCACCCTAACCTTGTCAACCTGATTGGCTATTGTGCTGATGGAGATCAAAGGCTTCTAGTTTATGAATATATGAAATTAGGATCCTTGGAAGACCACTTACATGATCTTTCACCTGGCAAGAAACGACTTGACTGGAACACGAGAATGAAAATAGCTGCCGGGGCTGCAAAGGGGTTAGAGTATCTACATGACAAAGCTAACCCTCCTGTCATATACCGAGATTTAAAGTGTTCCAACATTTTGCTTGGTGATGGGTATCATCCCAAGTTATCTGATTTTGGTTTGGCGAAAGTTGGTCCTGTCGGGGAAAACACTCATGTATCAACAAGGGTTATGGGAACCTATGGATATTGTGCTCCAGAGTATGCCATGACAGGTCAACTGACTCTGAAATCAGATGTTTATAGCTTTGGCGTAGTTCTTCTGGAAATAATTACTGGAAGGAAAGCAATTGACAATTCAAAATGTGCAGCAGAGCAGAATCTTGTTGCATGGGCTAGACCATTGTTTAAAGATCGAAGAAAATTCACACAAATGGCTGATCCAATGCTCCAAGGTCAATATCCTTCAAGAGGGCTATACCAAGCTCTCGCTGTTGCAGCAATGTGTGTTCAGGAGCAGGCAAATATGCGTCCAGTTATAGCTGATGTTGTGACAGCTTTGAGTTACCTTGCTTCACAAAAATATCAGCCCAATACACAGACTGTACAAAGCTCTCGCCTCGCTCCTGGGACTCCTCCTAGAACGAGGAGAGGAGTTTGA 1143 0.4156 MGWIPCSGSSNSKKKIKKKLEEVKDMRDGNKANPEKLKKNSSINSKNSSKSGESGHIAAQTFPFRELATATRNFRADCLLGEGGFGRVYKGHLETINQIVAIKQLDRNGLQGNREFLVEVLMLSLLHHPNLVNLIGYCADGDQRLLVYEYMKLGSLEDHLHDLSPGKKRLDWNTRMKIAAGAAKGLEYLHDKANPPVIYRDLKCSNILLGDGYHPKLSDFGLAKVGPVGENTHVSTRVMGTYGYCAPEYAMTGQLTLKSDVYSFGVVLLEIITGRKAIDNSKCAAEQNLVAWARPLFKDRRKFTQMADPMLQGQYPSRGLYQALAVAAMCVQEQANMRPVIADVVTALSYLASQKYQPNTQTVQSSRLAPGTPPRTRRGV 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g02504 380 PANTHER SERINE/THREONINE-PROTEIN KINASE PBL7-RELATED 1 378 - -
Tsu01g02504 380 MobiDBLite consensus disorder prediction 14 35 - -
Tsu01g02504 380 SMART serkin_6 74 351 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu01g02504 380 MobiDBLite consensus disorder prediction 1 55 - -
Tsu01g02504 380 MobiDBLite consensus disorder prediction 36 55 - -
Tsu01g02504 380 Pfam Protein tyrosine and serine/threonine kinase 79 347 IPR001245 GO:0004672|GO:0006468
Tsu01g02504 380 Gene3D Transferase(Phosphotransferase) domain 1 151 369 - -
Tsu01g02504 380 Gene3D Phosphorylase Kinase; domain 1 43 150 - -
Tsu01g02504 380 ProSitePatterns Serine/Threonine protein kinases active-site signature. 197 209 IPR008271 GO:0004672|GO:0006468
Tsu01g02504 380 PANTHER OS07G0668900 PROTEIN 1 378 - -
Tsu01g02504 380 SUPERFAMILY Protein kinase-like (PK-like) 60 363 IPR011009 -
Tsu01g02504 380 CDD STKc_IRAK 80 348 - -
Tsu01g02504 380 ProSiteProfiles Protein kinase domain profile. 74 351 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu01g02504 380 MobiDBLite consensus disorder prediction 361 380 - -
Tsu01g02504 380 ProSitePatterns Protein kinases ATP-binding region signature. 80 103 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g02504 Tsu-Chr1 27384654 27389288 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g02504 27 353 Glycoside Hydrolase AT3G07070 68.196 1.27e-168 476
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-1 Tsu01g02504 PK_Tyr_Ser-Thr 4.8e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g02504 - - gmx:100776041 656.751