Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g02493 atgaactCCAACTCTCACTCAATGgcaacaccaacaccaacaccGACTAGTGGCGGCGGAGGCGGAGATGCTTCTAGCAAAAAGATTAGAAAGCCATACACCATTACTAAGTCCAGAGAAAGCTGGTCTGACGAAGAACATGACAAGTTTCTTGAAGCTCTTCAATTATTTGATAGGGATTggaagaaaattgaagattttgTAGGTTCTAAAACTGTTATTCAGATTCGAAGCCATGCCCAAAAGTACTTCTTAAAGGTTCAAAAAAATGGAACACTTGCACATGTTCCTCCTCCTCGTCCTAAACGCAAAGCTATTCATCCTTATCCACAAAAAGCAACCAAAAATGTTTTGCTGCCACTGCCAGCATCCATTGCTTATGGATCATCCACAAATAGCCTTTTACCTGCAGGGTATGTCACATGGGATGAAAATTCTATGCTCATGGATACTTTTCAGGATGAACTCAACAATCTTCATGGAAATGAAGCTGATATTGGATCGGAGGGGATTAGCAACAGTGGTCTAACTGGTGTTGGAGACTCTACTACAAGGCTCACCGCTTCTCAAATACCAAATCAAGGGAAACAAAATCCTGTAACTCATGGTTTGCCGGACTTTGCTGAAGTTTACGGTTTCATTGGAAGTGTTTTTGATCCGGATACAAATGGCCATGTACAGAAGCTTAAGGAAATGGATCCTATAAACTTTGAAACTGTTTTGTTGTTAATGAGAAACCTCACTGTCAATTTGTCTAGCCCTAATTTTGATCCCATTAAGAAGGCAATGTCAACATATGATGTGAATAACGATGCAGTAGGAGGAGTTACTGATGTGAAGAAGCAGACAAATGATGTATCATGTCAAAACACTTAA 876 0.3801 MNSNSHSMATPTPTPTSGGGGGDASSKKIRKPYTITKSRESWSDEEHDKFLEALQLFDRDWKKIEDFVGSKTVIQIRSHAQKYFLKVQKNGTLAHVPPPRPKRKAIHPYPQKATKNVLLPLPASIAYGSSTNSLLPAGYVTWDENSMLMDTFQDELNNLHGNEADIGSEGISNSGLTGVGDSTTRLTASQIPNQGKQNPVTHGLPDFAEVYGFIGSVFDPDTNGHVQKLKEMDPINFETVLLLMRNLTVNLSSPNFDPIKKAMSTYDVNNDAVGGVTDVKKQTNDVSCQNT 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g02493 291 CDD SANT 41 84 IPR001005 -
Tsu01g02493 291 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 34 88 IPR017930 -
Tsu01g02493 291 SMART sant 38 86 IPR001005 -
Tsu01g02493 291 PANTHER SWI/SNF COMPLEX-RELATED 16 284 - -
Tsu01g02493 291 ProSiteProfiles Myb-like domain profile. 34 84 IPR001005 -
Tsu01g02493 291 ProSiteProfiles SANT domain profile. 37 90 IPR017884 -
Tsu01g02493 291 Pfam Myb-like DNA-binding domain 39 84 IPR001005 -
Tsu01g02493 291 MobiDBLite consensus disorder prediction 1 41 - -
Tsu01g02493 291 Gene3D - 42 89 - -
Tsu01g02493 291 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 37 86 IPR006447 GO:0003677
Tsu01g02493 291 MobiDBLite consensus disorder prediction 1 21 - -
Tsu01g02493 291 PANTHER PROTEIN REVEILLE 8 16 284 - -
Tsu01g02493 291 SUPERFAMILY Homeodomain-like 33 89 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g02493 Tsu-Chr1 27197545 27204053 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Tsu01g02493 Myb_DNA-binding 4.4e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g02493 - - gmx:100797466 433.335