Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g02491 ATGCCTCCGAAGCAATCAAAAGCTGATGTAGCGAAGAAGCAGAAAGTTGTAGAAGACAAAACTTTCGgtctcaaaaacaaaaacaaaagcaaagcAGTACAGAAATATGTTCAGAATCTCAAATCATCCGTGCAGCCCAAAACCGACCCCAAAGTCGAGGCAAAgAAAAAGAAGGAGGAAGAGAAGGCTAAGGAGAAAGAGCTGAATGATTTGTTCAAAATTGCTGTTAGTCAGCCTAAAGTCCCAGCTGGTGTTGATCCAAAGTCTATATTATGTGAGTTTTTTAAAGTGGGGCAGTGTGCTAAGGGCTTCAAATGCAAATTTTCCCATGATTTGAATGTTCAGAGGAAAGGGGAAAAGATTGACATATATAGTGATAAGCGTGATGATGAAACAATGGAGGAATGGGATCAAGAGACATTGGAGAAAGTGGTGGAATCGAAGAAAAATGAGTATAATCAGAACAAACCAACTGACATTGTATGTAAACACTTTTTAGATGCGGTAGAGAGGAAGCAATATGGTTGGTTTTGGCAATGCCCCAATGGTGGCAAGAATTGTCACTATAGACATGCACTTCCACCTGGGTATGTTTTAAAATCCCAAATGAAGGCTTTGTTAGAGGAAGAATCTGATAAAATGCCAATAGAGGAGGAGATTGAAAAACAGCGTGCCCAAGTGAAAACTACAACTCCCATCACTACTGAGTTGTTCATGcaatggaagaagaaaaagttgGATGAGAGAGATGCCAGCTTGGCTGCCCAACAGGCAGAGAGGGCTAAGAATGACCGTATGAGTGGTCGTGAGCTGTTTTTGTTGGATGCTAGCTTGTTTGTGGATGATGCTGAAGCATATGACAAGTACCAAAGAGAACCAGAACCTGATGAAACTGAACAGAATGGGACTGGGAGTGCTGCTAATAATGGTCCCAGCACCTCCGCAGCAGGAGGTGGTGCTGATGATGAAGTTCCTGATGACAttgatgacgatgatgatgaattggACTTGGATGAGTTAAATGAACTGGAAGCTAGTTTAGCCAAGACATCAATCCAAATTAATGAACCAGGAGCTGAAGCTTAA 1086 0.3932 MPPKQSKADVAKKQKVVEDKTFGLKNKNKSKAVQKYVQNLKSSVQPKTDPKVEAKKKKEEEKAKEKELNDLFKIAVSQPKVPAGVDPKSILCEFFKVGQCAKGFKCKFSHDLNVQRKGEKIDIYSDKRDDETMEEWDQETLEKVVESKKNEYNQNKPTDIVCKHFLDAVERKQYGWFWQCPNGGKNCHYRHALPPGYVLKSQMKALLEEESDKMPIEEEIEKQRAQVKTTTPITTELFMQWKKKKLDERDASLAAQQAERAKNDRMSGRELFLLDASLFVDDAEAYDKYQREPEPDETEQNGTGSAANNGPSTSAAGGGADDEVPDDIDDDDDELDLDELNELEASLAKTSIQINEPGAEA 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g02491 361 Gene3D - 203 277 - -
Tsu01g02491 361 MobiDBLite consensus disorder prediction 322 341 - -
Tsu01g02491 361 MobiDBLite consensus disorder prediction 290 361 - -
Tsu01g02491 361 PANTHER ZINC FINGER-CONTAINING PROTEIN P48ZNF 1 360 - -
Tsu01g02491 361 MobiDBLite consensus disorder prediction 38 61 - -
Tsu01g02491 361 Pfam DRG Family Regulatory Proteins, Tma46 214 294 IPR032378 -
Tsu01g02491 361 ProSiteProfiles Zinc finger C3H1-type profile. 86 113 IPR000571 GO:0046872
Tsu01g02491 361 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 21 1 360 - -
Tsu01g02491 361 ProSiteProfiles Zinc finger C3H1-type profile. 156 194 IPR000571 GO:0046872
Tsu01g02491 361 Coils Coil 51 71 - -
Tsu01g02491 361 SMART c3hfinal6 156 193 IPR000571 GO:0046872
Tsu01g02491 361 SMART c3hfinal6 86 112 IPR000571 GO:0046872
Tsu01g02491 361 MobiDBLite consensus disorder prediction 299 315 - -
Tsu01g02491 361 Gene3D - 85 202 - -
Tsu01g02491 361 SUPERFAMILY CCCH zinc finger 86 111 IPR036855 GO:0046872
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Tsu01g02491 DFRP_C 5.4e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g02491 - - gmx:100783113 560.836