Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Tsu01g02480 | ATGGGAAAGACACATGGAATGGGAGCTGCCCGCAAGCTGAAGTCCCACCGCAGAAGGCAAAGGTGGGCTGACAAGTCATACAAGAAGTCTCATCTTGGTAATGAATGGAAGAAGCCTTTTGCTGGCTCATCTCACGCAAAGGGAATTGTCCTTGAAAAGATTGGTATTGAGGCTAAGCAGCCTAACTCTGCTATCCGTAAGTGTGCCAGGGTTCAACTCATCAAGAATGGGAAGAAGATTGCTGCATTTGTTCCAAATGATGGTTGCTTAAACTACATCGAAGAGAATGATGAAGTTTTGATCGCTGGATTTGGAAGAAAGGGTCATGCTGTTGGTGATATTCCCGGAGTTAGATTCAAGGTTGTCAAGGTCTCTGGTGTATCTCTTCTTGCTCTTTTCAAGGAGAAGAAGGAGAAGCCAAGGTCTTAA | 429 | 0.4499 | MGKTHGMGAARKLKSHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS | 142 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Tsu01g02480 | 142 | ProSitePatterns | Ribosomal protein S12 signature. | 59 | 66 | IPR006032 | GO:0003735|GO:0005840|GO:0006412 | |
Tsu01g02480 | 142 | MobiDBLite | consensus disorder prediction | 1 | 30 | - | - | |
Tsu01g02480 | 142 | SUPERFAMILY | Nucleic acid-binding proteins | 20 | 140 | IPR012340 | - | |
Tsu01g02480 | 142 | Gene3D | - | 25 | 142 | IPR012340 | - | |
Tsu01g02480 | 142 | PIRSF | RPS12p_RPS12a_RPS23e_RPS12o | 16 | 142 | IPR006032 | GO:0003735|GO:0005840|GO:0006412 | |
Tsu01g02480 | 142 | TIGRFAM | uS12_E_A: ribosomal protein uS12 | 6 | 141 | IPR005680 | GO:0003735|GO:0006412|GO:0015935 | |
Tsu01g02480 | 142 | PANTHER | 30S RIBOSOMAL PROTEIN S12 FAMILY MEMBER | 1 | 142 | IPR006032 | GO:0003735|GO:0005840|GO:0006412 | |
Tsu01g02480 | 142 | CDD | Ribosomal_S23 | 26 | 139 | IPR005680 | GO:0003735|GO:0006412|GO:0015935 | |
Tsu01g02480 | 142 | Pfam | Ribosomal protein S12/S23 | 31 | 141 | IPR006032 | GO:0003735|GO:0005840|GO:0006412 | |
Tsu01g02480 | 142 | MobiDBLite | consensus disorder prediction | 9 | 25 | - | - | |
Tsu01g02480 | 142 | PANTHER | 40S RIBOSOMAL PROTEIN S23 | 1 | 142 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Tsu01g02480 | Tsu-Chr1 | 27039410 | 27041196 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Tsu01g02480 | 1 | 142 | Cytoplasmic Ribosomal Protein Gene Family | AT5G02960 | 95.070 | 1.42e-95 | 270 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Tsu01g02480 | K02973 | - | gmx:100796694 | 289.271 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Tsu07g03846 | 07 | 44644455 | 44645597 | Tsu01g02480 | 01 | 27039410 | 27041196 | ECH | |
Tsu01g02480 | 01 | 27039410 | 27041196 | Tsu01g02480 | 01 | 27039410 | 27041196 | ECH | |
Tsu07g03846 | 07 | 44644455 | 44645597 | Tsu01g02480 | 01 | 27039410 | 27041196 | PCT |