Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g02478 ATGAGTCCACGCGTATTCAGTCCTTGCCACAATTCCATAGTTCACCATCATCATTTACAGAGTCTGGCGGCGGAAGTTCACGAGCAGGGTATTCAGGACATGATTGATGAGTTACTTGCAGCAGGTCGAGACGAAGGAAATGCCGATGGAAATCAAAATAGTCGAAATATGGTTGTTTATCGGGATTTGAAGCCTGAGAATATGCTTTTGGACTCTAAATACAATGTCAAAATAGCTGATTTTGGTTTAAGCAACATAATGCACGATGGACACTTTCTTAAGACAAGTTGTGGCGGTCCCTACTATGCAGTCCCATTCTACCATGAATAA 330 0.4212 MSPRVFSPCHNSIVHHHHLQSLAAEVHEQGIQDMIDELLAAGRDEGNADGNQNSRNMVVYRDLKPENMLLDSKYNVKIADFGLSNIMHDGHFLKTSCGGPYYAVPFYHE 109
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g02478 109 PANTHER SERINE/THREONINE KINASE 54 105 - -
Tsu01g02478 109 ProSiteProfiles Protein kinase domain profile. 1 109 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu01g02478 109 PANTHER NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE 54 105 - -
Tsu01g02478 109 SUPERFAMILY Protein kinase-like (PK-like) 57 105 IPR011009 -
Tsu01g02478 109 ProSitePatterns Serine/Threonine protein kinases active-site signature. 58 70 IPR008271 GO:0004672|GO:0006468
Tsu01g02478 109 Gene3D Transferase(Phosphotransferase) domain 1 13 109 - -
Tsu01g02478 109 Pfam Protein kinase domain 56 105 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g02478 Tsu-Chr1 27021862 27024829 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g02478 58 105 CBL-interacting serine-threonine protein kinases AT5G57630 56.250 6.61e-14 63.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_AMPK Tsu01g02478 Pkinase 1.6e-13 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g02478 K07198 - osa:4332495 99.7525