Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g02467 ATGCTGAAGGTAGCTTGTTTACCAAGCCACCCACTTGATAAGCTAGTTGCTAGAAAGAAGCGACGAGCACGCGAAACTGTCTACAAAGCTTCCCTCCGCCCTATGGTCGAAGTACTCGGTGCTACTTTGATTCAAAAGATCTTTGTGAAAACCCTAACCGGCAAAACCATAACCCTAGAGGTAGAATCCTCTGACACCATCGACAACGTCAAAGCCAAAATCCAAGACAAGGAAGGAATTCCACCTGACCAGCAGCGTCTCATCTTCGCCGGAAAACAACTTGAAGACGGCCGCACTCTTGCCGATTACAACATCCAAAAAGAATCCACACTCCATCTCGTTCTCCGTCTCCGTGGCGGCATGCAAATCTTCGTCAAAACCCTAACTGGAAAAACCATCACACTCGAAGTTGAATCCTCTGACACAATCGACAACGTGAAGGCGAAGATTCAGGATAAAGAAGGAATTCCTCCTGATCAGCAGCGATTGATCTTTGCAGGGAAGCAATTGGAAGATGGGAGAACTCTTGCGGATTATAATATCCAGAAAGAGTCTACGCTTCATTTGGTTCTTAGGTTGCGTGGTGGAATGCAGATTTTTGTGAAGACGTTGACCGGGAAGACGATTACTCTTGAGGTTGAGAGTTCTGATACTATTGATAACGTGAAGGCGAAGATTCAAGACAAGGAGGGTATTCCACCTGATCAGCAGCGATTGATCTTTGCCGGTAAACAGCTTGAGGATGGACGGACTCTTGCTGATTATAATATTCAGAAAGAATCTACACTCCACCTTGTTCTCAGGCTCCGTGGTGGTGCCGATGTATAA 828 0.4614 MLKVACLPSHPLDKLVARKKRRARETVYKASLRPMVEVLGATLIQKIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGADV 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g02467 275 PANTHER UBIQUITIN 113 274 - -
Tsu01g02467 275 SUPERFAMILY Ubiquitin-like 120 196 IPR029071 -
Tsu01g02467 275 ProSiteProfiles Ubiquitin domain profile. 45 120 IPR000626 GO:0005515
Tsu01g02467 275 ProSitePatterns Ubiquitin domain signature. 147 172 IPR019954 -
Tsu01g02467 275 CDD Ubl_ubiquitin 46 120 - -
Tsu01g02467 275 Pfam Ubiquitin family 123 194 IPR000626 GO:0005515
Tsu01g02467 275 Pfam Ubiquitin family 199 270 IPR000626 GO:0005515
Tsu01g02467 275 Pfam Ubiquitin family 47 118 IPR000626 GO:0005515
Tsu01g02467 275 ProSitePatterns Ubiquitin domain signature. 223 248 IPR019954 -
Tsu01g02467 275 SMART ubq_7 197 268 IPR000626 GO:0005515
Tsu01g02467 275 SMART ubq_7 45 116 IPR000626 GO:0005515
Tsu01g02467 275 SMART ubq_7 121 192 IPR000626 GO:0005515
Tsu01g02467 275 PANTHER - 113 274 - -
Tsu01g02467 275 SUPERFAMILY Ubiquitin-like 45 120 IPR029071 -
Tsu01g02467 275 ProSiteProfiles Ubiquitin domain profile. 197 272 IPR000626 GO:0005515
Tsu01g02467 275 CDD Ubl_ubiquitin 121 196 - -
Tsu01g02467 275 ProSitePatterns Ubiquitin domain signature. 71 96 IPR019954 -
Tsu01g02467 275 PRINTS Ubiquitin signature 55 75 IPR019956 -
Tsu01g02467 275 PRINTS Ubiquitin signature 76 96 IPR019956 -
Tsu01g02467 275 PRINTS Ubiquitin signature 97 118 IPR019956 -
Tsu01g02467 275 CDD Ubl_ubiquitin 197 272 - -
Tsu01g02467 275 Gene3D - 198 275 - -
Tsu01g02467 275 Gene3D - 121 197 - -
Tsu01g02467 275 Gene3D - 45 120 - -
Tsu01g02467 275 ProSiteProfiles Ubiquitin domain profile. 121 196 IPR000626 GO:0005515
Tsu01g02467 275 PANTHER UBIQUITIN 46 199 - -
Tsu01g02467 275 PANTHER - 46 199 - -
Tsu01g02467 275 SUPERFAMILY Ubiquitin-like 196 273 IPR029071 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g02467 Tsu-Chr1 26895949 26899287 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g02467 197 273 Cytoplasmic Ribosomal Protein Gene Family AT3G62250 100.000 4.48e-49 158
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g02467 K08770 - vra:106768219 444.121