Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Tsu01g02467 | ATGCTGAAGGTAGCTTGTTTACCAAGCCACCCACTTGATAAGCTAGTTGCTAGAAAGAAGCGACGAGCACGCGAAACTGTCTACAAAGCTTCCCTCCGCCCTATGGTCGAAGTACTCGGTGCTACTTTGATTCAAAAGATCTTTGTGAAAACCCTAACCGGCAAAACCATAACCCTAGAGGTAGAATCCTCTGACACCATCGACAACGTCAAAGCCAAAATCCAAGACAAGGAAGGAATTCCACCTGACCAGCAGCGTCTCATCTTCGCCGGAAAACAACTTGAAGACGGCCGCACTCTTGCCGATTACAACATCCAAAAAGAATCCACACTCCATCTCGTTCTCCGTCTCCGTGGCGGCATGCAAATCTTCGTCAAAACCCTAACTGGAAAAACCATCACACTCGAAGTTGAATCCTCTGACACAATCGACAACGTGAAGGCGAAGATTCAGGATAAAGAAGGAATTCCTCCTGATCAGCAGCGATTGATCTTTGCAGGGAAGCAATTGGAAGATGGGAGAACTCTTGCGGATTATAATATCCAGAAAGAGTCTACGCTTCATTTGGTTCTTAGGTTGCGTGGTGGAATGCAGATTTTTGTGAAGACGTTGACCGGGAAGACGATTACTCTTGAGGTTGAGAGTTCTGATACTATTGATAACGTGAAGGCGAAGATTCAAGACAAGGAGGGTATTCCACCTGATCAGCAGCGATTGATCTTTGCCGGTAAACAGCTTGAGGATGGACGGACTCTTGCTGATTATAATATTCAGAAAGAATCTACACTCCACCTTGTTCTCAGGCTCCGTGGTGGTGCCGATGTATAA | 828 | 0.4614 | MLKVACLPSHPLDKLVARKKRRARETVYKASLRPMVEVLGATLIQKIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGADV | 275 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Tsu01g02467 | 275 | PANTHER | UBIQUITIN | 113 | 274 | - | - | |
Tsu01g02467 | 275 | SUPERFAMILY | Ubiquitin-like | 120 | 196 | IPR029071 | - | |
Tsu01g02467 | 275 | ProSiteProfiles | Ubiquitin domain profile. | 45 | 120 | IPR000626 | GO:0005515 | |
Tsu01g02467 | 275 | ProSitePatterns | Ubiquitin domain signature. | 147 | 172 | IPR019954 | - | |
Tsu01g02467 | 275 | CDD | Ubl_ubiquitin | 46 | 120 | - | - | |
Tsu01g02467 | 275 | Pfam | Ubiquitin family | 123 | 194 | IPR000626 | GO:0005515 | |
Tsu01g02467 | 275 | Pfam | Ubiquitin family | 199 | 270 | IPR000626 | GO:0005515 | |
Tsu01g02467 | 275 | Pfam | Ubiquitin family | 47 | 118 | IPR000626 | GO:0005515 | |
Tsu01g02467 | 275 | ProSitePatterns | Ubiquitin domain signature. | 223 | 248 | IPR019954 | - | |
Tsu01g02467 | 275 | SMART | ubq_7 | 197 | 268 | IPR000626 | GO:0005515 | |
Tsu01g02467 | 275 | SMART | ubq_7 | 45 | 116 | IPR000626 | GO:0005515 | |
Tsu01g02467 | 275 | SMART | ubq_7 | 121 | 192 | IPR000626 | GO:0005515 | |
Tsu01g02467 | 275 | PANTHER | - | 113 | 274 | - | - | |
Tsu01g02467 | 275 | SUPERFAMILY | Ubiquitin-like | 45 | 120 | IPR029071 | - | |
Tsu01g02467 | 275 | ProSiteProfiles | Ubiquitin domain profile. | 197 | 272 | IPR000626 | GO:0005515 | |
Tsu01g02467 | 275 | CDD | Ubl_ubiquitin | 121 | 196 | - | - | |
Tsu01g02467 | 275 | ProSitePatterns | Ubiquitin domain signature. | 71 | 96 | IPR019954 | - | |
Tsu01g02467 | 275 | PRINTS | Ubiquitin signature | 55 | 75 | IPR019956 | - | |
Tsu01g02467 | 275 | PRINTS | Ubiquitin signature | 76 | 96 | IPR019956 | - | |
Tsu01g02467 | 275 | PRINTS | Ubiquitin signature | 97 | 118 | IPR019956 | - | |
Tsu01g02467 | 275 | CDD | Ubl_ubiquitin | 197 | 272 | - | - | |
Tsu01g02467 | 275 | Gene3D | - | 198 | 275 | - | - | |
Tsu01g02467 | 275 | Gene3D | - | 121 | 197 | - | - | |
Tsu01g02467 | 275 | Gene3D | - | 45 | 120 | - | - | |
Tsu01g02467 | 275 | ProSiteProfiles | Ubiquitin domain profile. | 121 | 196 | IPR000626 | GO:0005515 | |
Tsu01g02467 | 275 | PANTHER | UBIQUITIN | 46 | 199 | - | - | |
Tsu01g02467 | 275 | PANTHER | - | 46 | 199 | - | - | |
Tsu01g02467 | 275 | SUPERFAMILY | Ubiquitin-like | 196 | 273 | IPR029071 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Tsu01g02467 | Tsu-Chr1 | 26895949 | 26899287 | Proximal |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Tsu01g02467 | 197 | 273 | Cytoplasmic Ribosomal Protein Gene Family | AT3G62250 | 100.000 | 4.48e-49 | 158 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Tsu01g02467 | K08770 | - | vra:106768219 | 444.121 |