Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g02465 ATGCAGAAGTCCTCGGGAGATCCTCGAAAGCATGCAATTGCTCGACGATCCCAAACCGCGACAAGACTTCAAGTCATCATACTCATCTtcgagcatgacgacttgggggctcctattctggactgggcctataGCCCAACATCTAAGGAATTCCTCTACATGCGCCGTCGACCATGGCCCAAGAAGAAGCAGCCCAAAGATCTTCGTGAAAACCCTACCGGCAAAACCATAACCCTAGAGGTAGAATCCTCCGACACCATCGACAACGTCAAAGCCAAAATCCAAGACAAGGAAGGAATTCCACCAGACCAACAGCGTCTCATCTTCGCCGGAAAACAACTCGAAGACGGCCGAACTCTTGCCGATTACAACATCCAAAAAGAATCCACACTCCACCTCGTCCTCCGTCTCCGTGGCGGCATGCAAATCTTTGTCAAAACCCTAACTGGAAAAACCATCACACTCGAAGTTGAATCCTCCGACACAATCGACAACGTGAAGGCGAAGATTCAGGATAAAGAAGGAATCCCTCCTGATCAGCAGCGATTGATCTTTGCAGGGAAGCAATTGGAAGATGGGAGAACTCTTGCGGATTATAATATCCAGAAAGAGTCCACGCTTCATTTAGTGCTTCGGTTGCGTGGAGGGATGCAGATTTTTGTGAAGACGTTGACGGGGAAGACTATTACTCTTGAGGTGGAGAGTTCTGATACTATTGATAATGTGAAGGCGAAGATTCAAGATAAGGAGGGGATTCCACCTGATCAGCAGCGATTGATCTTTGCCGGTAAACAGCTTGAGGATGGAAGGACTCTTGCTGATTATAATATTCAGAAAGAATCTACTCTTCACCTTGTTCTCAGGCTCCGTGGTGGTGCAGGCGATGCATAA 891 0.4512 MQKSSGDPRKHAIARRSQTATRLQVIILIFEHDDLGAPILDWAYSPTSKEFLYMRRRPWPKKKQPKDLRENPTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGAGDA 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g02465 296 PANTHER POLYUBIQUITIN 12 73 222 - -
Tsu01g02465 296 SUPERFAMILY Ubiquitin-like 215 293 IPR029071 -
Tsu01g02465 296 ProSitePatterns Ubiquitin domain signature. 91 116 IPR019954 -
Tsu01g02465 296 ProSiteProfiles Ubiquitin domain profile. 217 292 IPR000626 GO:0005515
Tsu01g02465 296 ProSiteProfiles Ubiquitin domain profile. 141 216 IPR000626 GO:0005515
Tsu01g02465 296 PANTHER POLYUBIQUITIN 12 141 293 - -
Tsu01g02465 296 SUPERFAMILY Ubiquitin-like 140 216 IPR029071 -
Tsu01g02465 296 PRINTS Ubiquitin signature 96 116 IPR019956 -
Tsu01g02465 296 PRINTS Ubiquitin signature 75 95 IPR019956 -
Tsu01g02465 296 PRINTS Ubiquitin signature 117 138 IPR019956 -
Tsu01g02465 296 ProSitePatterns Ubiquitin domain signature. 167 192 IPR019954 -
Tsu01g02465 296 Pfam Ubiquitin family 73 138 IPR000626 GO:0005515
Tsu01g02465 296 Pfam Ubiquitin family 219 290 IPR000626 GO:0005515
Tsu01g02465 296 Pfam Ubiquitin family 143 214 IPR000626 GO:0005515
Tsu01g02465 296 SMART ubq_7 141 212 IPR000626 GO:0005515
Tsu01g02465 296 SMART ubq_7 217 288 IPR000626 GO:0005515
Tsu01g02465 296 SMART ubq_7 65 136 IPR000626 GO:0005515
Tsu01g02465 296 ProSitePatterns Ubiquitin domain signature. 243 268 IPR019954 -
Tsu01g02465 296 CDD Ubl_ubiquitin 141 216 - -
Tsu01g02465 296 Gene3D - 217 295 - -
Tsu01g02465 296 Gene3D - 69 140 - -
Tsu01g02465 296 Gene3D - 141 216 - -
Tsu01g02465 296 PANTHER UBIQUITIN 141 293 - -
Tsu01g02465 296 PANTHER UBIQUITIN 73 222 - -
Tsu01g02465 296 CDD Ubl_ubiquitin 217 292 - -
Tsu01g02465 296 SUPERFAMILY Ubiquitin-like 71 140 IPR029071 -
Tsu01g02465 296 ProSiteProfiles Ubiquitin domain profile. 66 140 IPR000626 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g02465 Tsu-Chr1 26863685 26867563 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g02465 217 293 Cytoplasmic Ribosomal Protein Gene Family AT3G62250 100.000 9.43e-49 158
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g02465 K08770 - rcu:107262163 432.565