Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g02461 ATGGCAACTCAAGCTTCCAAGGATAATAATCACCAAGGAACTACCACCATTGAAAATAAAGCTGATATTTCAATTCAAAAGgGTATGGCATCATTTGAAATAACAGAGGAAGTCCCAAATGAACAACAAAGAACAAGGCAAAACCTTACCTTAGATACACCAAAAAAAACTCATGAAGAAGCAAAAGAagattttttgagaataaacaTGCCACTAACTCCATCACCAAGAAGAGTGGTATTTTCTCCTTGCACAAGTCCTAGTTTTTTCATTCCAAGCAATGAATCCCCCGGTCCTTCTCCTTCTAGTTCTAAAACTAGATCAACTcttaaaaaaacacttattcCTAAACTCAGTTTTAAATTCAAGAACACAACTTCTGAGATTGAAAAAGCGGCTTTCCTTGCACTTGAAGGTTCGTCTGCAGTGCCACAAAAAAAGCCTTTTCTTTCGAGGACATTGTCACGTATGAAATCTAGAGGGAGGAAAACATCTTCATTACCGGTATCACCAGTTCCTCGTTCAACTCCAGGGTCTGTGCATGGAGGGAAAGCTTTTCCAACAATGGTTAGTGAGAAAGAACTGCAATTACCAATTCATCGTTCACGATCTGTTCCTGCATTGACAGGAGAAGATACTCCTGTAGGTGGCAAGTTTCGTATAGTTCGGAACATAACACAATTGAATGAGAAAATTGCCACCATAACATCTGCAGCATCTCCAACTagtgaaaatgTTGAAACTGAGGATGAAGGTGAAGATATTCCTGAAGAAGAAGCTGTTTGTAGAATTTGTATGGTTGAATTGGGAGAAGGTGGTGATACTTTTAAGTTGGAGTGTAGCTGTAAAGGTGAGCTTTCACTAGCACACAAAGAATGTGCAGTTAAATGGTTTAGTATTAAAGGTAATAGGACATGTGATGTGTGCAAACAAGAAGTTCAGAACTTACCTGTCACTCTTTTAAGACTTCATCAAGCTAATTTGCAATCTAGCAGAGGTCACTTAAATGAATCATCTCAATACAGGGTTTGGCAGGATGCCCCCATTCTTGTCATTGTCAACATGCTGGCATACTTTTGTTTTCTTGAGCAGCTTCTTGTTTCAAGTATGGGATCTGGTGCTATTGCCATGTCCCTCCCCTTTTCTTGTATACTTGGCCTTCTTGCAAGCATGACAGCTACAACCATGGtgaggagaaatcatgtttgGATTTATGGAACCATGCAGTTTGCTCTGGTGGTTCTTGCTGGACATCTTCTATATTCATTGGCTCATATGGAAGCTGTTTTGGCAATCCTACTAGCTACATTTGCTGGATTTGGAACTGTAATGTGTGGAACATGTATTCTTATGGATATTTTGAAATGGAGGAGAAGATGGCTTGCTCAATCGAATCAACAGAATGGAGGTTCCGAAGCAGTAGTTCCGCCTGATCAATCATCTGCAGTTActcatcaaattcaaattgatcCTCAACATATTCAGAGTAATGTGGAAAACTCTCCTAGGCAAATGAGCTGA 1521 0.3787 MATQASKDNNHQGTTTIENKADISIQKGMASFEITEEVPNEQQRTRQNLTLDTPKKTHEEAKEDFLRINMPLTPSPRRVVFSPCTSPSFFIPSNESPGPSPSSSKTRSTLKKTLIPKLSFKFKNTTSEIEKAAFLALEGSSAVPQKKPFLSRTLSRMKSRGRKTSSLPVSPVPRSTPGSVHGGKAFPTMVSEKELQLPIHRSRSVPALTGEDTPVGGKFRIVRNITQLNEKIATITSAASPTSENVETEDEGEDIPEEEAVCRICMVELGEGGDTFKLECSCKGELSLAHKECAVKWFSIKGNRTCDVCKQEVQNLPVTLLRLHQANLQSSRGHLNESSQYRVWQDAPILVIVNMLAYFCFLEQLLVSSMGSGAIAMSLPFSCILGLLASMTATTMVRRNHVWIYGTMQFALVVLAGHLLYSLAHMEAVLAILLATFAGFGTVMCGTCILMDILKWRRRWLAQSNQQNGGSEAVVPPDQSSAVTHQIQIDPQHIQSNVENSPRQMS 506
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g02461 506 MobiDBLite consensus disorder prediction 1 62 - -
Tsu01g02461 506 CDD RING_CH-C4HC3_MARCH 262 310 - -
Tsu01g02461 506 MobiDBLite consensus disorder prediction 155 185 - -
Tsu01g02461 506 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 246 317 IPR013083 -
Tsu01g02461 506 PANTHER AMINOACYLTRANSFERASE, E1 UBIQUITIN-ACTIVATING ENZYME-RELATED 8 501 - -
Tsu01g02461 506 MobiDBLite consensus disorder prediction 90 110 - -
Tsu01g02461 506 MobiDBLite consensus disorder prediction 36 50 - -
Tsu01g02461 506 Pfam RING-variant domain 262 309 IPR011016 GO:0008270
Tsu01g02461 506 SMART ringv_2 261 310 IPR011016 GO:0008270
Tsu01g02461 506 PANTHER OS02G0165000 PROTEIN 8 501 - -
Tsu01g02461 506 MobiDBLite consensus disorder prediction 468 506 - -
Tsu01g02461 506 ProSiteProfiles Zinc finger RING-CH-type profile. 254 316 IPR011016 GO:0008270
Tsu01g02461 506 MobiDBLite consensus disorder prediction 1 22 - -
Tsu01g02461 506 SUPERFAMILY RING/U-box 258 313 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g02461 Tsu-Chr1 26771990 26777994 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g02461 247 316 C3H Transcription Factor Family AT2G37950 40.845 3.56e-12 63.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g02461 - - gmx:100787963 661.759