Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g02460 ATGCAAATGATTCCCAATGACCCTTTTTCACTATCCACTTCACTTGGAGTGTTTAGTACTCAAGAGCAAAACacaaaccctaaccctaaacctaatACTCCTCCTGTCcccaagaagaagagaaatcttCCAGGAACACCAGATCCAGATGCCGAGGTCATTGCTCTCTCACCAAAGACACTCATGGCAACAAACAGATTCATCTGTGAAATATGCAACAAAGGGTTTCAAAGAGATCAAAATCTTCAACTTCACAGAAGAGGACACAATCTTCCATGGAAGCTTAGGCAGAGATCAAACAAAGATGTTATTAAGAAGAAAGTTTACATCTGTCCAGAAAAGACTTGTGTCCACCATGATCCTTCAAGAGCACTTGGTGACCTCACAGGTATAAAAAAGCACTTTAGTAGAAAGCACGGTGAAAAAAAGTGGAAATGTGAAAAATGTTCAAAGAAATATGCAGTCCAATCTGATTGGAAAGCTCACACAAAAACATGTGGTACAAGAGAATACAAATGTGACTGTGGCACCCTCTTCTCAagGAAAGATAGTTTCATTACACACAGAGCTTTCTGTGATGCATTAGCAGAAGAGAGTGCAAGGATAACTTCAGTTCCAACAACAAATCTAAATTTCAAGAATGAAGAAGGTAATGGTTCTATGATGAGTTCACATTCACATTCACAACATGGAATTTTTCATAACATAGGTGGAATTCCACATCCACAATATGGTTCACAACATCATGGATTTCATGTAGATTTCAACAACTCTTTGATGATGGATCAACAAAGACCAAGTTTATCACTCTGGTTGAACCAGGGGAATCATGAAATGGGACAAagttctaataataataatgtccTTTTTGGTTCTTCATGTTTATCTGAGATTGTTCAAATGGGAAATaccaataacaacaataatgccttgatttgttcttcttcttcttcatcatcatcaatgttGTCTAATTTTGGTTCAAATTCAACCTCTGCTGCAAATCTTTCTCAATCAAAAACTGCAGCAGCATCTGGTTCTGGTTCTGTTTCTGCTACACCAATGTCAGCAACTGCTCTTCTGCAAAAAGCAGCTCAAATGGGTTCAACTAGAAGCAATAATAACTctgctactactactactactactaataataataataacaactctTCCATTTTTAGTTCTAGTTTTGGAGTAATGacatcaccatcttcatcaaATAATTGTTTTGATCATTTTTTAATGCATGGACAACAAAGTGAACAaggaaaattaaatattttgcatcATGGTGGTAGTACTTCAAACTCTATGGAACAAGGTCAAAATAGTAATTTGACAAGAGATTTTCTTGGTGTGAGTGGAAGAATTAGTGGTCCTCCTCCTCAGTTTCTACCTCAAGAGCTAGCAAAATTTGCTTCTATTCATTACACAGGAAATTAA 1443 0.3202 MQMIPNDPFSLSTSLGVFSTQEQNTNPNPKPNTPPVPKKKRNLPGTPDPDAEVIALSPKTLMATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLRQRSNKDVIKKKVYICPEKTCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHTKTCGTREYKCDCGTLFSRKDSFITHRAFCDALAEESARITSVPTTNLNFKNEEGNGSMMSSHSHSQHGIFHNIGGIPHPQYGSQHHGFHVDFNNSLMMDQQRPSLSLWLNQGNHEMGQSSNNNNVLFGSSCLSEIVQMGNTNNNNNALICSSSSSSSSMLSNFGSNSTSAANLSQSKTAAASGSGSVSATPMSATALLQKAAQMGSTRSNNNSATTTTTTNNNNNNSSIFSSSFGVMTSPSSSNNCFDHFLMHGQQSEQGKLNILHHGGSTSNSMEQGQNSNLTRDFLGVSGRISGPPPQFLPQELAKFASIHYTGN 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g02460 480 Pfam Zinc-finger double-stranded RNA-binding 67 89 IPR022755 -
Tsu01g02460 480 ProSiteProfiles Zinc finger C2H2 type domain profile. 67 89 IPR013087 -
Tsu01g02460 480 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 335 476 - -
Tsu01g02460 480 MobiDBLite consensus disorder prediction 28 42 - -
Tsu01g02460 480 MobiDBLite consensus disorder prediction 1 50 - -
Tsu01g02460 480 PANTHER ZINC FINGER PROTEIN JACKDAW 335 476 IPR033243 GO:0003700
Tsu01g02460 480 Gene3D Classic Zinc Finger 122 201 - -
Tsu01g02460 480 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 7 337 - -
Tsu01g02460 480 SUPERFAMILY beta-beta-alpha zinc fingers 66 164 IPR036236 -
Tsu01g02460 480 PANTHER ZINC FINGER PROTEIN JACKDAW 7 337 IPR033243 GO:0003700
Tsu01g02460 480 SMART c2h2final6 144 164 IPR013087 -
Tsu01g02460 480 SMART c2h2final6 109 139 IPR013087 -
Tsu01g02460 480 SMART c2h2final6 67 89 IPR013087 -
Tsu01g02460 480 Gene3D Classic Zinc Finger 45 120 - -
Tsu01g02460 480 MobiDBLite consensus disorder prediction 1 27 - -
Tsu01g02460 480 MobiDBLite consensus disorder prediction 362 389 - -
Tsu01g02460 480 ProSitePatterns Zinc finger C2H2 type domain signature. 69 89 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g02460 Tsu-Chr1 26756960 26759658 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g02460 1 475 IDZ Gene Family AT5G03150 48.224 1.83e-135 399
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Tsu01g02460 zf-C2H2_jaz 7e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g02460 K25870 - gmx:100801182 517.694
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g02460 01 26756960 26759658 Tsu01g02460 01 26756960 26759658 ECH