Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g02459 ATGAGCGTAATCGACCTTCTAACTCGAGTTGATTCCATTTGCAAAAAGTACGATAAATACGACCTCGAAAAGCACAAGGACGCCAATGTCTCCGGCGACGATGCTTTCGTTAGACTATACTCTTCTGTCAACTCTGACATTGAATCCCTACTTCAGAAAGCAGAAACAGCTTCCAAGGATAAAGGGAAGGCATCTGCTGTAGCGATCAATGCCGAGATTCGTCGTACTAAGGCTCGGTTGTTGGAGGAAGTTCCCAAGTTGCAGAGGTTGGCTGTCAaaaagGTAAAAGGGCTTTCGTCGCAAGAATTTGCTGCACGCAATGATCTTGTTCTTGCATTGCCAGAAAGAATCCAAGCTATCCCAGATGGGACTCCTGCCGCGCCAAAACAAACTGGTGGTTGGGCATCTTCTGCCTCACGCGctgaaattaaatttgattcgGATGGACGATTTGATGATGAGTACTTTCAATCAACTGATCAATCAAACCAATTCAGGCAGGAATATGAAATGCGTAGAATAAAACAGGATCAAGGTTTGGATGTGATTGCAGAAGGATTAGATACTTTGAAACACATGGCACATGATATGAACGAGGAACTGGATAGACAAGTTCCCCTGATGGATGAGATTGACACTAAGGTGGACAAGGCATCGTCTGATCTTAAGAATACTAATGTTAGACTTAAAGACACAGTGAATCAGCTTCGATCCAGTCGAAACTTCTGTATTGATATTGTTTTGTTGATTATAATTCTGGGAATTGCTGCCTACTTATACAATGTGCTAAAGAAATGA 798 0.416 MSVIDLLTRVDSICKKYDKYDLEKHKDANVSGDDAFVRLYSSVNSDIESLLQKAETASKDKGKASAVAINAEIRRTKARLLEEVPKLQRLAVKKVKGLSSQEFAARNDLVLALPERIQAIPDGTPAAPKQTGGWASSASRAEIKFDSDGRFDDEYFQSTDQSNQFRQEYEMRRIKQDQGLDVIAEGLDTLKHMAHDMNEELDRQVPLMDEIDTKVDKASSDLKNTNVRLKDTVNQLRSSRNFCIDIVLLIIILGIAAYLYNVLKK 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g02459 265 CDD SNARE_Qc 175 230 - -
Tsu01g02459 265 Gene3D - 170 231 - -
Tsu01g02459 265 PANTHER SYNTAXIN 1 261 IPR045242 -
Tsu01g02459 265 SMART tSNARE_6 165 232 IPR000727 -
Tsu01g02459 265 Pfam SNARE domain 207 256 IPR000727 -
Tsu01g02459 265 ProSitePatterns Syntaxin / epimorphin family signature. 176 215 IPR006012 GO:0005484|GO:0006886|GO:0016020
Tsu01g02459 265 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 170 232 IPR000727 -
Tsu01g02459 265 PANTHER SYNTAXIN-73 1 261 - -
Tsu01g02459 265 SUPERFAMILY SNARE fusion complex 162 230 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g02459 Tsu-Chr1 26734671 26741408 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g02459 1 264 SNARE and Associated Proteins AT3G09740 75.940 2.54e-154 429
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g02459 K08506 - gmx:100819272 467.618