Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g02453 ATGAAATTCTCACTTTTCGCTTGTTTCTCTTCTtcaaataacaacaacaaaaacgATTTCCCTGAGGCAGAGAATGATGGAAGTTTTCGTGTATTTACTTATCACCAATTGAAATTAGCTACTGGTAATTTTGGTGACAAGATTGGAGAAGGTGGATTTGGCTCTGTTTATAAGGGGAGGCTCATTGATGGATCTTCAGTGGCAGTGAAAGTGCTTTCTATTGAGATTGAATCCATGCGAGGAGAGAGGGAATTTGTTGCAGAATTGGCTACACTAGCAAATATAAAGCATCAAAATCTTGTTAGCCTTAAAGGGTGTTGTGTTGAAGGAGCAAAAAGATATTTAGTCTATgattacatggaaaataatagCCTCCACCACACTTTCTTAGGTTCTGAGGATAAAAGGATGAGATTCAGTTGGGAAGCAAGGAGGAATATATCAATTGGTGTGGCTAGTGGAGTTTCCTATCTCCATGAGGAGTTGAAGCCTCATATAGTACACAGAGACATCAAAGCCAAAAATATACTCATTGACAGAGATTTTACACCAAAAGTTGCAGATTTTGGTTTGGCTAAATTAATGAGAGATGAAACATCTTACATTAGCACTAAAGTTGCTGGGACATTggGTTATTTGGCTCCAGAATATGCTAGTTCAGGACAACTAAGAAGAAAATCAGATGTTTATAGCTTTGGAGTATTGCTTTTACAAATTGTGACTGGCTCGGCTGTTGTAGATGCTTATACAGATATTGAACGTTTCATTGTAGAAAAGGCTTGGGCAGCTTATGAAGCCAATGATCTATTAAGGATAGTGGATCCTGTGCTTAATACAAACTATTCAGCCGAAGAAGCCATAAAATTCCTCAAAGTTGGATTACTTTGCGTGCAAGAAACTGCAAAACTTAGACCAAGAATGTCAGAGGTTGTAGAAATATTGACCAACAACAATATTGATATGAAAGATGTTCACATTTCAAAACCAGGATTTGTTGCTGATCTCAGAAACATAAGAATAAAACAACACATGACAACAGATTCGCCGCAAGGATCTAGTTCTTCGGGAACAAGCTTTGCAAGCTCTGTTTGGAGTGTTAAAAATCTCGCTCGTTGA 1116 0.3647 MKFSLFACFSSSNNNNKNDFPEAENDGSFRVFTYHQLKLATGNFGDKIGEGGFGSVYKGRLIDGSSVAVKVLSIEIESMRGEREFVAELATLANIKHQNLVSLKGCCVEGAKRYLVYDYMENNSLHHTFLGSEDKRMRFSWEARRNISIGVASGVSYLHEELKPHIVHRDIKAKNILIDRDFTPKVADFGLAKLMRDETSYISTKVAGTLGYLAPEYASSGQLRRKSDVYSFGVLLLQIVTGSAVVDAYTDIERFIVEKAWAAYEANDLLRIVDPVLNTNYSAEEAIKFLKVGLLCVQETAKLRPRMSEVVEILTNNNIDMKDVHISKPGFVADLRNIRIKQHMTTDSPQGSSSSGTSFASSVWSVKNLAR 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g02453 371 Gene3D Phosphorylase Kinase; domain 1 13 119 - -
Tsu01g02453 371 ProSiteProfiles Protein kinase domain profile. 42 319 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu01g02453 371 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 8 343 - -
Tsu01g02453 371 SMART serkin_6 42 290 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu01g02453 371 ProSitePatterns Serine/Threonine protein kinases active-site signature. 166 178 IPR008271 GO:0004672|GO:0006468
Tsu01g02453 371 ProSitePatterns Protein kinases ATP-binding region signature. 48 70 IPR017441 GO:0005524
Tsu01g02453 371 PANTHER RECEPTOR-LIKE KINASE 8 343 - -
Tsu01g02453 371 Gene3D Transferase(Phosphotransferase) domain 1 120 328 - -
Tsu01g02453 371 SUPERFAMILY Protein kinase-like (PK-like) 17 315 IPR011009 -
Tsu01g02453 371 CDD STKc_IRAK 48 316 - -
Tsu01g02453 371 Pfam Protein kinase domain 45 311 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g02453 Tsu-Chr1 26681335 26684082 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g02453 32 314 Receptor kinase-like Gene Family AT1G53430 50.523 1.45e-90 291
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Tsu01g02453 Pkinase 9.1e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g02453 - - gmx:100813945 554.673
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g02453 01 26681335 26684082 Tsu01g02453 01 26681335 26684082 ECH