Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g02435 ATGAATACATTTATGGATtcaagagaaaataataagtcATCAGAAGAAGTTGAAAGGTGTTTAGATCCTCAGCTATGGCATGCCTGTGCAGGTGGAATGGTTCAGATGCCAACAGTGAACAGTAAAGTTTATTACTTTCCTCAAGGTCATGCTGAACATGCATGTGGACCTGTTAACTTCATGAATTGTCCAAAAGTTTCACCTTTGATTCCATGCAAAGTTGTTTCTATTAAGTATATGGCTGATTCTGAAACAGATGAGGTTTATGCAAAGCTTAAGCTTTTTCCTTTGAGTggaaatggaaatggaaatgaTGGTCAAGATTATTATGGCAATGATGTTGTTGAAAATCAAGATAAGCCTGTTTCATTTGCAAAGACATTGACTCAATCTGATGCTAACAATGGTGGAGGTTTTTCTGTTCCTCGGTATTGTGCCGAGACGATTTTCCCTCGTTTGGATTACGCGGCAGATCCTCCTCTTCAGAACATTTTGGCTAAAGATGTTCACGGCGAGACATGGAAGTTTAGGCATATTTATAGGGGGACACCGAGGCGGCATCTTTTGACTACTGGTTGGAGTACTTTTGTTAATCACAAGAAGCTTATTGCCGGGGATTCAATTGTGTTTTTGAGGGCAGAAAACGGTGATCTTTGCGTTGGGATACGTCGAGCGAAAAAGGGTATCGGTGGTGGACATGAGGACCCTTCAGGGTGGAATCCTGTTGGAGAAAATTTTCCTCTTCCTTGGTTTACACAGAATGAGAATCAAATGATGAGAAACATTAACGACAATAACAGAAACGGTTTGAACACGAGCGCAAATATAACTGGGAGGGCAAAAGTTAGGCCAGAAGCGGTCCTCGAAGCCGTAACTCTAGCCGCGAATAAGCAACCGTTTGAGGTTGTTTACTACCCTCGCGCAAGTACACCGGAGTTTTGTGTGAAGGCGCCTTTAGTAGAGGCGGCAATGCAGATTCGATGGTGTTCTGGAATAAGATTCAAGATGGCCTTTGAAACCGAGGACTCGTCTCGAATTAGTTGGTTTATGGGAATTGTATCTGGAGTTCAGTTTGTTGATCCCCTTCTTTGGCCTAACTCACCTTGGAGGCTTCTCCAGGTTAAATGGGATGAACCAGATTTACTGCAAAATGTGAGAAGGGTAAGTCCATGGTTAGTTGAATTGGTAGCAAACATTCCTTCCATAAACCTTTCCCCTTTCTCACAACCAAGGAAGAAATTGAGATTGTCACCGCACCAAGATTTCCCCTTTGACAGCCAAATTCCGGTGCCGACGTTTCCAAATAACCTTCTAGGTTCGAGCAATTTATTTCGTTGTCTACCCGAAAATACTCCTGCTGGCATGCAGGGAGCCAGGCATGCTCATTATGGTCTTCCAATATCGGATCATCACCTCAGTAAAGTTCAGTCAGGTCTATTTTCGGCCAGTTTCGTGCCTTTTGATCATGCTGCTAAACTACCTACTGTTTCTAATAATCTAATGATGCAAAAATCTAACATGAGTGAGAAAGTCTCTTGCTTATTATCTATGGCAAGTTCTACTCAGTCTTCGAACAAATTCGATGATGAGAAGAAACCTCAGCTTGTTCTTTTCGGCAAAAAAATTCTCACTGAGCAACAGATCTCTGGTGATCGTTCATCAGATGGAAATGCCGATAACACGAGTAACTTTTCCGATGGTTTGGGAACTCCTCTTCATCAAAAAGGCTTACAGAAACACCCCTCTTGTGACAGTTTCCCAAGGTATAAGGATAACAACCAAGAAACTGAGACAAGTTTGGAGAGTACTGATCACTGCAAAGTTTTTCTCGAATCGGAAGATGTTGGTCGGACAATTGACCTCTCTTTACTTGAGTCTTATGATGAACTGTACAGAAAGCTGGCAGAGATGTTTGGCATAGATAAATATGAGAAGGTAAGTCGCGTGCTCTACCGTGATATATCAGGAGCAGTCAAAAACATTGGAGATGAACCATTCAGGTAA 2004 0.4147 MNTFMDSRENNKSSEEVERCLDPQLWHACAGGMVQMPTVNSKVYYFPQGHAEHACGPVNFMNCPKVSPLIPCKVVSIKYMADSETDEVYAKLKLFPLSGNGNGNDGQDYYGNDVVENQDKPVSFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYAADPPLQNILAKDVHGETWKFRHIYRGTPRRHLLTTGWSTFVNHKKLIAGDSIVFLRAENGDLCVGIRRAKKGIGGGHEDPSGWNPVGENFPLPWFTQNENQMMRNINDNNRNGLNTSANITGRAKVRPEAVLEAVTLAANKQPFEVVYYPRASTPEFCVKAPLVEAAMQIRWCSGIRFKMAFETEDSSRISWFMGIVSGVQFVDPLLWPNSPWRLLQVKWDEPDLLQNVRRVSPWLVELVANIPSINLSPFSQPRKKLRLSPHQDFPFDSQIPVPTFPNNLLGSSNLFRCLPENTPAGMQGARHAHYGLPISDHHLSKVQSGLFSASFVPFDHAAKLPTVSNNLMMQKSNMSEKVSCLLSMASSTQSSNKFDDEKKPQLVLFGKKILTEQQISGDRSSDGNADNTSNFSDGLGTPLHQKGLQKHPSCDSFPRYKDNNQETETSLESTDHCKVFLESEDVGRTIDLSLLESYDELYRKLAEMFGIDKYEKVSRVLYRDISGAVKNIGDEPFR 667
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g02435 667 Pfam B3 DNA binding domain 124 225 IPR003340 GO:0003677
Tsu01g02435 667 Gene3D - 122 226 IPR015300 -
Tsu01g02435 667 ProSiteProfiles B3 DNA-binding domain profile. 124 226 IPR003340 GO:0003677
Tsu01g02435 667 MobiDBLite consensus disorder prediction 548 569 - -
Tsu01g02435 667 MobiDBLite consensus disorder prediction 584 600 - -
Tsu01g02435 667 Gene3D - 599 667 - -
Tsu01g02435 667 SMART B3_2 124 226 IPR003340 GO:0003677
Tsu01g02435 667 SUPERFAMILY DNA-binding pseudobarrel domain 114 257 IPR015300 -
Tsu01g02435 667 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 11 666 IPR044835 GO:0003677|GO:0006355|GO:0009725
Tsu01g02435 667 CDD B3_DNA 123 224 IPR003340 GO:0003677
Tsu01g02435 667 PANTHER AUXIN RESPONSE FACTOR 11 666 - -
Tsu01g02435 667 Pfam Auxin response factor 290 373 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Tsu01g02435 667 ProSiteProfiles PB1 domain profile. 603 667 IPR000270 GO:0005515
Tsu01g02435 667 MobiDBLite consensus disorder prediction 548 600 - -
Tsu01g02435 667 Gene3D - 327 401 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g02435 Tsu-Chr1 26292214 26295142 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g02435 17 666 B3 DNA Binding Superfamily AT4G30080 55.539 0.0 672
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Tsu01g02435 B3 4.5e-21 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g02435 - - gmx:100796522 962.214
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g04136 01 49262079 49265020 Tsu01g02435 01 26292214 26295142 ECH
Tsu07g03873 07 44849705 44851814 Tsu01g02435 01 26292214 26295142 ECH
Tsu01g02435 01 26292214 26295142 Tsu01g04136 01 49262079 49265020 ECH
Tsu01g02435 01 26292214 26295142 Tsu01g02435 01 26292214 26295142 ECH
Tsu01g02435 01 26292214 26295142 Tsu02g03598 02 40368102 40372041 ECH