Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g02425 ATGGCTTCTGTTATATCAAGATCTGTAAGGTTTCATGATGAtcttgaaaaagagaaattaaaagaaGTTGAAGAATATCAAATGGAAATGATGACCTATGAAACGAGTGCTCAACACAAGCGTGTAAGGGATGAAAAAAACAAGTCATCAAATGGAAGAGAACTTTCAAGGGTGTTTTCTGAAGATTATGATGCAGAAGAGATTTTAGTATTAGATCCTAGAGGACCTAGAGTAAATTTATGGAACAAAATATTCTTAGCAGCttgtttaatttcattgtttgtCGATCCACTTTTCTTTTACTTACCAGTtgttaagaaagaaaaatgcatTGATATGTCACTCGGTCTTGAAGTTTCACTTACCATAATTAGGACATTGGTTGATGCATTTTACATTATTCAGATTTATGTTAGGTTTCAAACTGCTTATATCGCTCCTTCATCTCGTGTTTCTGGTAGAGGAGAACTTATTATAGATTCCTCAAAGATTGCTTCAAATTATATGAGTCGAGACTTTTGGTTTGATCTTGTTGCTGCTCTACCACTTCCTCAGGTACTGATTTGGGCTGTAATTCCGAATCTGAAGGGGTCAGAAATGATTGCATCAAGGCAAGTATTGCGCCTTGTGTCCATTTTCCAGTACTTATTGAGGTTGTATCTTATTTATCCTCTATCATCTGAAATCACCAAGGCAAATGGTGTAATGATGGAAAAAGCTTGGGCTGGTGCAGCTTATAATTTGACACTCTATATGCTTGCTAGTCATGTCTTGGGATCAACCTGGTACCTGTTATCAATCGAACGACAAGATGAATGTTGGAAGAAAGCTTGCTCACTTGAATATCCACATTGCCGGTATCATTATCTTGATTGTCAAAGCATAAGTGATCCAAATAGGAATGCATGGCTTAGATCAAGCAATCTATCAGGCCTATGTGATCAGAACAGTGACTTCTTTCAGTTTGGAATTTTTGCTGATGCTCTTACGTTGGAAATAACTAGCTCAAAATTCTTAAACAAATACTATTACTGTCTTTGGTGGGGATTGAGGAATCTAAGCTCTGCAGGACAGAATCTCTTAACAAGTACACATGTTCCGGAGATAAATTTTGCTGTAATTGTAGCAATTCTTGGATTGGTGCTTTTTGCACTACTCATAGGAAATATGCAAACCTACCTTCAATCCACCACTATACGGCTTGAAGAGTGGAGGATAAGAAGAACAGATACAGAAAGGTGGATGCATCACAGGCAACTCCCACGTTACTTGAAGCAAAGTGTTCGACGCCATGACCAATTCAGATGGGTAGCTACTCGTGGAGTCGACGAGGAAGCTATTCTTAGAGACCTTCCTGTTGATCTCAGACGTGACATTAAACGCCACCTTTGCCTTAATCTAGTTAGACAAGTACCACTATTTGATCAAATGGATGACAGAATGTTAGATGCAATATGTGAAAGACTTAAACCAACTCTATGCACTCCAGGAACATGCATAGTTCGTGAATGCGACCCTGTCAACGAGATGCTCTTCATCGTTCGAGGACGCTTAGATTCTTGCACAACCAACGGTGGTAGAACAGGCTTCTTCAACACCTGCAGAATAGGCTCGGGTGACTTCTGTGGCGAAGAGCTTCTCCCATGGGCCTTAGACCCTCGTCCAACAGCTGTACTTCCTTCGTCAACTCGCACGGTGAAAGCCATCACCGAGGTTGAAGCTTTTGCGCTCATTGCAGAGGACTTAAAGTTTGTTGCGGCGCAATTCCGCCGGTTACATAGCAAACAACTGAGACAAACATTTAGATTCTATTCACATCAGTGGCGGACATGGGCTGCATGTTTTATACAAGCGGCTTGGTTTCGGTATAAGAGAACGAAAGAGACAAATGAGGTTAAGGAAAAGGAGAATCTTATGATGATGGCAACAAATGTGAAATATTATGGAAATGATGATAGTCAATATTTCTCTGCACCTCTGCAGGTTCCAATGGGATCAAGTTATCCAATGTATTCCGGGAAACTTGTAGGTAATCTAAGGAGAGGTAGGAGCATGAGATATGGTTCTGAACTTGATATTCTTGGTGGATTAAAGAAGCCTATTGATCCAGATTTTAATGATGATGGTGGTTAA 2133 0.3919 MASVISRSVRFHDDLEKEKLKEVEEYQMEMMTYETSAQHKRVRDEKNKSSNGRELSRVFSEDYDAEEILVLDPRGPRVNLWNKIFLAACLISLFVDPLFFYLPVVKKEKCIDMSLGLEVSLTIIRTLVDAFYIIQIYVRFQTAYIAPSSRVSGRGELIIDSSKIASNYMSRDFWFDLVAALPLPQVLIWAVIPNLKGSEMIASRQVLRLVSIFQYLLRLYLIYPLSSEITKANGVMMEKAWAGAAYNLTLYMLASHVLGSTWYLLSIERQDECWKKACSLEYPHCRYHYLDCQSISDPNRNAWLRSSNLSGLCDQNSDFFQFGIFADALTLEITSSKFLNKYYYCLWWGLRNLSSAGQNLLTSTHVPEINFAVIVAILGLVLFALLIGNMQTYLQSTTIRLEEWRIRRTDTERWMHHRQLPRYLKQSVRRHDQFRWVATRGVDEEAILRDLPVDLRRDIKRHLCLNLVRQVPLFDQMDDRMLDAICERLKPTLCTPGTCIVRECDPVNEMLFIVRGRLDSCTTNGGRTGFFNTCRIGSGDFCGEELLPWALDPRPTAVLPSSTRTVKAITEVEAFALIAEDLKFVAAQFRRLHSKQLRQTFRFYSHQWRTWAACFIQAAWFRYKRTKETNEVKEKENLMMMATNVKYYGNDDSQYFSAPLQVPMGSSYPMYSGKLVGNLRRGRSMRYGSELDILGGLKKPIDPDFNDDGG 710
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g02425 710 Pfam Ion transport protein 80 399 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Tsu01g02425 710 Gene3D Jelly Rolls 471 591 IPR014710 -
Tsu01g02425 710 PRINTS EAG/ELK/ERG potassium channel family signature 136 145 IPR003938 GO:0005249|GO:0006813|GO:0016020
Tsu01g02425 710 PRINTS EAG/ELK/ERG potassium channel family signature 368 379 IPR003938 GO:0005249|GO:0006813|GO:0016020
Tsu01g02425 710 PRINTS EAG/ELK/ERG potassium channel family signature 386 395 IPR003938 GO:0005249|GO:0006813|GO:0016020
Tsu01g02425 710 PRINTS EAG/ELK/ERG potassium channel family signature 436 443 IPR003938 GO:0005249|GO:0006813|GO:0016020
Tsu01g02425 710 PRINTS EAG/ELK/ERG potassium channel family signature 253 263 IPR003938 GO:0005249|GO:0006813|GO:0016020
Tsu01g02425 710 PRINTS EAG/ELK/ERG potassium channel family signature 342 359 IPR003938 GO:0005249|GO:0006813|GO:0016020
Tsu01g02425 710 ProSiteProfiles cAMP/cGMP binding motif profile. 473 558 IPR000595 -
Tsu01g02425 710 PANTHER PROTEIN CNGC15A 10 707 - -
Tsu01g02425 710 Gene3D - 86 397 - -
Tsu01g02425 710 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 10 707 - -
Tsu01g02425 710 Gene3D Helix hairpin bin 401 464 - -
Tsu01g02425 710 SUPERFAMILY Voltage-gated potassium channels 72 395 - -
Tsu01g02425 710 CDD CAP_ED 473 604 IPR000595 -
Tsu01g02425 710 SUPERFAMILY cAMP-binding domain-like 403 595 IPR018490 -
Tsu01g02425 710 SMART cnmp_10 473 604 IPR000595 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g02425 Tsu-Chr1 26125246 26129577 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g02425 46 708 Ion Channels AT2G28260 63.348 0.0 883
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g02425 K05391 - gmx:100804375 1138.25
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g02425 01 26125246 26129577 Tsu01g02425 01 26125246 26129577 ECH