Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g02424 ATGTCTACCTCTGCAACTTCCTTAGCACTTCCATCTCTCTTCACCAAAAATCCTCTCTGTTCTTCTCCCCAATGTTTCTCTTCACTCCCTTCCCTTTCACTCAACCCTAATTTCAAACCATTTTCCATTTCCTCTGTTTCTCTCCGTTCAACTTTGTCCAATCGTTTCGTTACTCGTGTCGCTGTTTCGTCTGAATTTGACCAGGAAGAAGATACCTTTGATGAAGATAGACGTAGTTACTCTGCCACCCAGAGGTTGTTTGTGGGTAACCTTCCTTTCAGTTTTGACAGTGCTCAACTTGCTGAGATATTTGATAACTCTGGAAATGTTGAGATGGTTGAGgtTATTTATGATAAAACTACGGGAAGAAGCAGAGGATTTGGTTTTGTGACTATGTCTACAGCTGAGGAAGCTGAAGCTGCTGCTCAGCAGTTAAATGGCTATGAAGTGGAAGGAAGGCCATTGAGAGTGAATGCTGGACCACCTCCACCTCGTACCGAGACCTCTCGTTTTGGTGACAATTCTCGTTTTGGTGACAGGAGAAGTCCTCCAAGAAGTGGTTCTTTTGCAGGTAGCGAAAACCGTGTTCATGTTGGTAATCTTGCTTGGGGTGTTGACAACTTGGCACTTGAGTCATTGTTTAGCGAACAAGGAACGGTTTTAGAAGCGAAGGTAATCTATGACAGGGAAAGTGGTAGATCTAGAGGCTTTGGATTTGTGACTTACGGTAGCGCTGAAGAGGTCAACAGTGCTATTCGGTCCTTAGATGGTGTGGACTTGAATGGAAGAGCCATACGGGTTGCACCGGCTGATGGTAAACCAAAGCGTGAATTTTGA 837 0.4444 MSTSATSLALPSLFTKNPLCSSPQCFSSLPSLSLNPNFKPFSISSVSLRSTLSNRFVTRVAVSSEFDQEEDTFDEDRRSYSATQRLFVGNLPFSFDSAQLAEIFDNSGNVEMVEVIYDKTTGRSRGFGFVTMSTAEEAEAAAQQLNGYEVEGRPLRVNAGPPPPRTETSRFGDNSRFGDRRSPPRSGSFAGSENRVHVGNLAWGVDNLALESLFSEQGTVLEAKVIYDRESGRSRGFGFVTYGSAEEVNSAIRSLDGVDLNGRAIRVAPADGKPKREF 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g02424 278 SUPERFAMILY RNA-binding domain, RBD 193 276 IPR035979 GO:0003676
Tsu01g02424 278 SUPERFAMILY RNA-binding domain, RBD 83 190 IPR035979 GO:0003676
Tsu01g02424 278 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 86 156 IPR000504 GO:0003723
Tsu01g02424 278 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 197 266 IPR000504 GO:0003723
Tsu01g02424 278 SMART rrm1_1 85 158 IPR000504 GO:0003723
Tsu01g02424 278 SMART rrm1_1 195 268 IPR000504 GO:0003723
Tsu01g02424 278 Gene3D - 191 278 IPR012677 -
Tsu01g02424 278 Gene3D - 61 190 IPR012677 -
Tsu01g02424 278 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 194 272 IPR000504 GO:0003723
Tsu01g02424 278 MobiDBLite consensus disorder prediction 153 191 - -
Tsu01g02424 278 PANTHER OS02G0815200 PROTEIN 1 278 - -
Tsu01g02424 278 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 84 162 IPR000504 GO:0003723
Tsu01g02424 278 PANTHER 29 KDA RIBONUCLEOPROTEIN, CHLOROPLASTIC 1 278 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g02424 Tsu-Chr1 26120533 26123390 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g02424 81 277 Eukaryotic Initiation Factors Gene Family AT4G34110 30.457 1.81e-18 83.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g02424 - - gmx:100786275 327.02
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g02424 01 26120533 26123390 Tsu01g02424 01 26120533 26123390 ECH