Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g02417 ATGGAGGGAATTACCAATGGCCATGCTGAAACAACTTTTTGTGTGACCAAAAGTGTTGGTGATCCACTTAACTGGGGTGCAGCCGCGGAGTCATTGATGGGGAGTCATTTGGATGAGGTGAAGCGTATGGTTGAGGAGTATCGTAACCCGTTGGTTAAAATTGGCGGCGAGACGCTTACCATTGCTCAGGTGGCTGGAATTGCTTCTCATGATAGTGGTGTGAGGGTGGAGCTGTCTGAGTCCGCAAGGGCCGGCGTTAAGGCGAGCAGTGATTGGGTGATGGACAGCATGAATAATGGGACTGATAGTTATGGTGTTACCACCGGTTTTGGTGCCACCTCTCACCGGAGAACCAAGCAGGGCGGTGCCTTGCAGAAGGAGCTAATTAGGTTTTTGAATGCTGGAATATTTGGCAATGGTACAGAATCTAACTGTACACTACCACACACAGCAACTAGAGCTGCAATGCTTGTGAGAATCAACACTCTTCTTCAAGGATATTCTGGAATTAGATTTGAAATTTTGGAGGCTATCACTAAGCTCCTAAACAACAACATTACCCCATGTTTACCACTTCGTGGTACAATCACGGCTTCGGGTGATCTTGTTCCACTTTCTTACATTGCCGGTTTGTTAACCGGAAGACCCAACTCCAAAGCTGTTGGACCATCTGGAGAAATTCTCAATGCCAAAGAAGCTTTTCAACTTGCAGGCATTGGTTCTGAGTTTTTTGAATTGCAACCAAAAGAAGGTCTTGCTCTTGTTAATGGTACTGCCGTTGGTTCTGGTTTAGCTTCTATTGTTCTATTTGAAGCAAATGTACTAGCGGTTTTGTCTGAAGTTATGTCGGCAATTTTTGCTGAAGTTATGCAAGGGAAACCAGAATTCACCGATCATTTGACTCATAAGTTGAAGCATCACCCTGGTCAAATTGAAGCTGCTGCTATTATGGAACATATTTTGGATGGAAGTGCTTATGTTAAAGCAGCTAAGAAGTTACACGAAACTGATCCATTACAAAAGCCTAAACAGGATCGTTATGCACTTAGAACTTCACCTCAATGGCTTGGTCCTTTGATTGAAGTGATAAGATTTTCAACCAAGTCAATTGAGAGAGAAATTAACTCAGTTAATGACAATCCTTTGATTGATGTTTCAAGGAACAAGGCCATTCATGGTGGTAACTTTCAAGGAACACCTATTGGAGTTTCAATGGATAACACACGTTTAGCTCTTGCTTCAATTGGTAAACTCATGTTTGCTCAATTCTCTGAACTTGTTAATGATTTTTACAACAACGGTTTGCCTTCCAATCTTACTGCTAGTAGGAACCCAAGTTTGGACTACGGTTTCAAGGGAGCTGAAATTGCCATGGCTTCTTATTGCTCTGAGTTACAATATCTTGCTAATCCCGTCACCACCCATGTCCAAAGTGCCGAGCAACACAACCAAGATGTTAACTCTTTGGGTTTGATTTCTTCTAGAAAAACAAATGAATCTATTGAGATCTTAAAGCTCATGTCTTCCACTTTCTTGATTGCACTATGTCAAGCAATCGACTTGAGGCATTTGGAGGAGAATTTGAGGAACACCGTCAAGAACACCGTAAGCCAAGTAGCTAAGAGAACACTCACTACCGGTGTGAACGGAGAACTTCATCCTTCTAGATTTTGTGAGAAAGATTTGCTCAAAGTTGTTGATAGGGAGTATGTATTTGCCTATGCTGATGATCCTTGTCTAGCCACATACCCTTTGATGCAAAAGTTGAGACAAGTGCTTGTGGATCATGCATTGGTAAATGCTGATGGGGAGAAGAATTTGAACACATCAATCTTCCAAAAGATTGCAACTTTTGAGGATGAGTTGAAAGCTATCTTGCCAAAGGAGGTTGAAAGTACAAGGGCTGCATATGAAAATGGGCAGTGTGGAATTTCAAACAAGATTAAGGAATGCAGGTCTTACCCATTGTATAAGTTTGTTAGAGAGGAGTTGGGAACAGCGTTGCTAACCGGAGAAAAAGTGATATCGCCAGGCGAAGAGTGCGACAAATTGTTCACAGCTATGTGCCAAGGTAAAATTGTTGATCCTCTTATGGAATGCCTCGGAGAGTGGAACGGTGCTCCTCTTCCAATATGTTAA 2139 0.4236 MEGITNGHAETTFCVTKSVGDPLNWGAAAESLMGSHLDEVKRMVEEYRNPLVKIGGETLTIAQVAGIASHDSGVRVELSESARAGVKASSDWVMDSMNNGTDSYGVTTGFGATSHRRTKQGGALQKELIRFLNAGIFGNGTESNCTLPHTATRAAMLVRINTLLQGYSGIRFEILEAITKLLNNNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKAVGPSGEILNAKEAFQLAGIGSEFFELQPKEGLALVNGTAVGSGLASIVLFEANVLAVLSEVMSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSAYVKAAKKLHETDPLQKPKQDRYALRTSPQWLGPLIEVIRFSTKSIEREINSVNDNPLIDVSRNKAIHGGNFQGTPIGVSMDNTRLALASIGKLMFAQFSELVNDFYNNGLPSNLTASRNPSLDYGFKGAEIAMASYCSELQYLANPVTTHVQSAEQHNQDVNSLGLISSRKTNESIEILKLMSSTFLIALCQAIDLRHLEENLRNTVKNTVSQVAKRTLTTGVNGELHPSRFCEKDLLKVVDREYVFAYADDPCLATYPLMQKLRQVLVDHALVNADGEKNLNTSIFQKIATFEDELKAILPKEVESTRAAYENGQCGISNKIKECRSYPLYKFVREELGTALLTGEKVISPGEECDKLFTAMCQGKIVDPLMECLGEWNGAPLPIC 712
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g02417 712 PANTHER PHENYLALANINE AMMONIA-LYASE 1-LIKE 17 712 - -
Tsu01g02417 712 SUPERFAMILY L-aspartase-like 21 712 IPR008948 GO:0003824
Tsu01g02417 712 TIGRFAM phe_am_lyase: phenylalanine ammonia-lyase 21 701 IPR005922 GO:0005737|GO:0006559|GO:0016841
Tsu01g02417 712 CDD PAL-HAL 57 522 IPR001106 -
Tsu01g02417 712 Gene3D Fumarase/aspartase (Central domain) 259 707 - -
Tsu01g02417 712 PANTHER HISTIDINE AMMONIA-LYASE 17 712 IPR001106 -
Tsu01g02417 712 ProSitePatterns Phenylalanine and histidine ammonia-lyases signature. 194 210 IPR022313 GO:0016841
Tsu01g02417 712 Pfam Aromatic amino acid lyase 59 533 IPR001106 -
Tsu01g02417 712 Gene3D - 525 646 IPR023144 -
Tsu01g02417 712 Gene3D - 13 258 IPR024083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g02417 Tsu-Chr1 26047216 26052274 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g02417 21 712 Monolignol Biosynthesis Gene Families AT2G37040 83.815 0.0 1236
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g02417 K10775 - gmx:100302735 1286.94
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g04122 01 49133675 49140707 Tsu01g02417 01 26047216 26052274 ECH
Tsu07g03879 07 44937642 44945792 Tsu01g02417 01 26047216 26052274 ECH
Tsu01g02417 01 26047216 26052274 Tsu01g04122 01 49133675 49140707 ECH
Tsu01g02417 01 26047216 26052274 Tsu01g02417 01 26047216 26052274 ECH