Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g02413 ATGGAAACAGATCCAGATGCAGAGGTGATAGCACTATCTCCCAAGACCCTAATGGCAACAAACAGGTTTATTTGTGAGGTATGCAACAAAGGATTCCAAAGAGAGCAAAACCTACAGCTACACAGAAGAGGACACAATTTGCCTTGGAAGCTTAAGCAAAAGACAACAAAAGAGCCTAAGAGAAAGGTTTATCTGTGTCCTGAGCCCACATGTGTTCATCATGACCCTTCAAGAGCACTTGGTGACCTCACTGGTATTAAGAAACACTTCTCTCGCAAACATGGTGAGAAGAAATGGAAGTGTGATAAGTGCTCCAAGAAATATGCTGTTCAATCTGATTGGAAAGCTCATTCCAAAACTTGTGGCACTAGGGAGTACAGATGTGACTGTGGCACTCTCTTCTCCAGAAGGGACAGTTTCATCACTCACAGAGCTTTCTGTGATGCATTAGCTCAAGAGGGTCCTAGACAGCCACCAATTACCCTACCTGGTTCCATTGGCTCTCACCTCTATGGAAGCACAAGCAACACCATGGGTCTTAACTTATCACATGTTTCCCCACAAATGTCCAATATGCACCAGCAACAAGACCACCACAGTAACTCAGCTACCGATATCCTTCGCCTCGGCGCATCTGCTAATCGAACCGGACAATTCGACCACCACAATATCCTTCCAACAACTTTCAGACCTAATAACTCTTTCTTCAATAGCAACAACATTCATGATCCAAACCAAAACTATGTCCCTGACCAAGGTTTAATGATGCAGCAGAATAACAGCAACAATAACAATCTCTTCAATATCCCAAATTTCCTTTCGAGTAATAACAGTGCTACTACAAACACTAACAGTAGCAACAACTCATTCTCTGAGCATTTGAATGTGAACAATGAAGGAACAAATTTCTTCACTGGTTCAGGTGGGACAAGTAGTGCTCCATCATCACTCTTTAGCACTTTCCCTCAAGGAGGTGGAAATAGTAACATTAATGCTGCTGCTGCTACTTCTATAGCTTCAATGTCAGCAACTGCACTTCTTCAAAAAGCTGCTCAAATGGGTGCAACTTCAAGCAATGGAAATGGAACTACCGCAACTTCGCTTCTGAAAAGCTTCGGAAACAATACTGGTAGTAATTCAGCTTCttctggtggtggtggtggtgctgaACATAACAGACAAATAAtgagtggtggtggtggaagtGGGAACTATGGTTTTGGTGGTGGAAATGAACAGAGTAATTTGAATGATTTGATGAATTCTTTTGCTGCTACTGGGAATAGTTCAATATTTGAAACCGGAGGAGGGGGTGTAGGGCTTGGAAGTGGAGGTGGAGATAGTAGGCAGATGACTCGTGACTTTTTAGGAGTTGGTCAGATTGTGAGAAGCATGAGTGGTGCTGTTGGAGGACAAAGAGAACATGCAGCTTTTAACTTGCCAAGTTCTTTGGAAGGAGATCAAAGAAACAACATTAATGCTGCAACATCATTTGGAAGAGGAGGAGGAAATTTTCAGTGA 1521 0.4122 METDPDAEVIALSPKTLMATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKTTKEPKRKVYLCPEPTCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCDKCSKKYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAQEGPRQPPITLPGSIGSHLYGSTSNTMGLNLSHVSPQMSNMHQQQDHHSNSATDILRLGASANRTGQFDHHNILPTTFRPNNSFFNSNNIHDPNQNYVPDQGLMMQQNNSNNNNLFNIPNFLSSNNSATTNTNSSNNSFSEHLNVNNEGTNFFTGSGGTSSAPSSLFSTFPQGGGNSNINAAAATSIASMSATALLQKAAQMGATSSNGNGTTATSLLKSFGNNTGSNSASSGGGGGAEHNRQIMSGGGGSGNYGFGGGNEQSNLNDLMNSFAATGNSSIFETGGGGVGLGSGGGDSRQMTRDFLGVGQIVRSMSGAVGGQREHAAFNLPSSLEGDQRNNINAATSFGRGGGNFQ 506
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g02413 506 Gene3D Classic Zinc Finger 3 71 - -
Tsu01g02413 506 MobiDBLite consensus disorder prediction 355 409 - -
Tsu01g02413 506 ProSitePatterns Zinc finger C2H2 type domain signature. 25 45 IPR013087 -
Tsu01g02413 506 MobiDBLite consensus disorder prediction 355 387 - -
Tsu01g02413 506 Gene3D Classic Zinc Finger 77 153 - -
Tsu01g02413 506 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 4 468 - -
Tsu01g02413 506 Pfam Zinc-finger double-stranded RNA-binding 23 45 IPR022755 -
Tsu01g02413 506 PANTHER ZINC FINGER PROTEIN, PUTATIVE-RELATED 4 468 - -
Tsu01g02413 506 SMART c2h2final6 64 94 IPR013087 -
Tsu01g02413 506 SMART c2h2final6 99 119 IPR013087 -
Tsu01g02413 506 SMART c2h2final6 23 45 IPR013087 -
Tsu01g02413 506 ProSiteProfiles Zinc finger C2H2 type domain profile. 23 45 IPR013087 -
Tsu01g02413 506 SUPERFAMILY beta-beta-alpha zinc fingers 22 119 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g02413 Tsu-Chr1 26005969 26012969 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g02413 6 470 IDZ Gene Family AT2G02070 47.893 1.68e-125 377
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Tsu01g02413 zf-C2H2_jaz 3e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g02413 K25870 - gmx:100786121 488.419