Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g02401 ATGAAATGTCAAAGAGTTCAGGTGGATGGATCATATGTGCCTTCCCTTCGAGATGATGAAATGGAAGTTGAACATTTGTTTGAAGAGCCTATAAATGATCATATTTCATTGGATGGCAGTTTAGCTTCTCATACAGCTTTGATTGACAAGGATGATTTACAACTTGAGgtCCTTGATGATTTCCTGGATGAGGGATTCCTGGATGATGttgaaattgatgattttgaagtAACTGATGGTGTCTCTGATGCACGTGGAGGGTATTTCTTGGATTTTGATTTTGCCAAAGTTGAGTTACTAGGTTCTGGTGCTAATGAAGAGTCGCCTTTAGAAAACTCAAATTCGGAAAGTCAATCTCCAGGAGTTAGTGGAAGTAGCACTGTTGGTGGGATATCAGAATCAACAAAAGTACTACCAAATAGTACACAATCTAAATGCAAAATTGAATCTATAGATGAGACTGTCACCCATGATACAAATGGTGTCTTCAGGAACAGTCCAAGTCAACCATCAAATGTAGATTGCATGTACAACATTTCACTTGATATACAGCATCTGCATGAGTTGAGTAATGGTTATCCTTTAGCTGGTGGTATGTTGTCTTGTAAGAAGGAAAATGTTACTGTTGAAGATTACCAATCTGTTCCACCCAGAGAGAAGAGATTCCGAAAGCCTACACAGAGGTATATTGAAGAATCTTCAAATTTAaagtcaaaagaaaaagtacGAACTACTGGTGCAAAAAAGAAACGACGAAGTGTGTCATGTAGTGAACTTCATACCAGAACTAAAAGATTGGAAAATATTCCAATCGAAATCGAAAAGTTTAGTGATTCTGATAGTGATGTGACACTTTATGAGTTACAACACTGCAAGAAGCATCCAAAGAAAGAGAAACTAGACTATGACGATGATTATTTTTCCTCGGAGGAGTCTGAGGATGAAGAATTGACACCAAAAAGATGTAGAACAAAAGATCGAAGAAAGAATCAAAGGATGTGGACAACCGCTGAAGTGACAAAGTTGATGGATGGCATATCTGAATATGGAGTTGGTCGATGGACTGATATACAGAGGTTTTTGTTTTCTGCTGCAGGCTACCGAACTCCCACAGATATTAGGGACAAGTGGCGTAACCTTTTGCGAGCCAGTTCTTCACAGAGGTTCAACAAGAAAGAGGGCGAACTAAATGACGAGACTTCCCCTCGAACCTTACCTCTCAGTGTGGCAAGCCGAGTGCTGGAATTGTCTAAAATTCACCCATACCCAAAGCGACGAAACAAAAAGAGAACATTTGTTAGCCAAGTTGGGTCTTCTGACATTGCTAATCAAAGCAACGGTTCTTCTATTAGTCTTGGCAGAAGAAATGTACGTAGGAAGAAGTGTACTTAA 1392 0.3843 MKCQRVQVDGSYVPSLRDDEMEVEHLFEEPINDHISLDGSLASHTALIDKDDLQLEVLDDFLDEGFLDDVEIDDFEVTDGVSDARGGYFLDFDFAKVELLGSGANEESPLENSNSESQSPGVSGSSTVGGISESTKVLPNSTQSKCKIESIDETVTHDTNGVFRNSPSQPSNVDCMYNISLDIQHLHELSNGYPLAGGMLSCKKENVTVEDYQSVPPREKRFRKPTQRYIEESSNLKSKEKVRTTGAKKKRRSVSCSELHTRTKRLENIPIEIEKFSDSDSDVTLYELQHCKKHPKKEKLDYDDDYFSSEESEDEELTPKRCRTKDRRKNQRMWTTAEVTKLMDGISEYGVGRWTDIQRFLFSAAGYRTPTDIRDKWRNLLRASSSQRFNKKEGELNDETSPRTLPLSVASRVLELSKIHPYPKRRNKKRTFVSQVGSSDIANQSNGSSISLGRRNVRRKKCT 463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g02401 463 Pfam Myb-like DNA-binding domain 334 381 IPR001005 -
Tsu01g02401 463 Gene3D - 320 432 - -
Tsu01g02401 463 PANTHER TRF-LIKE 8 1 461 - -
Tsu01g02401 463 PANTHER MYB-LIKE DNA-BINDING DOMAIN CONTAINING PROTEIN, EXPRESSED 1 461 - -
Tsu01g02401 463 SMART sant 330 383 IPR001005 -
Tsu01g02401 463 MobiDBLite consensus disorder prediction 425 463 - -
Tsu01g02401 463 MobiDBLite consensus disorder prediction 432 453 - -
Tsu01g02401 463 MobiDBLite consensus disorder prediction 106 144 - -
Tsu01g02401 463 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 326 385 IPR017930 -
Tsu01g02401 463 CDD SANT_TRF 332 382 - -
Tsu01g02401 463 SUPERFAMILY Homeodomain-like 328 392 IPR009057 -
Tsu01g02401 463 ProSiteProfiles Myb-like domain profile. 326 381 IPR001005 -
Tsu01g02401 463 MobiDBLite consensus disorder prediction 104 144 - -
Tsu01g02401 463 MobiDBLite consensus disorder prediction 230 252 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g02401 Tsu-Chr1 25902519 25907197 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Tsu01g02401 Myb_DNA-binding 6.5e-09 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g02401 - - aprc:113871152 473.396
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g02401 01 25902519 25907197 Tsu01g02401 01 25902519 25907197 ECH