Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g02366 ATGGCCAAAAATTGCTTCGACCTCAAAACAATGACATATTACTCACCCAGACAACCTATCCACCTTCCAACTGATCCCAACCTCTCCCTAACCTCATTCCTCTTCCAATCCACTTCCTCCGTCACCGATACCATCGCCATCGCCGACGCTCACTCTGGCGACTCCCTAACCTTCCGTCAACTAAAAATTGAAGTTTCCGCCCTCTCTCAATCATTGCTCCGCATCGGAATCCAACAAGGCGATATCATTTTGCTATTTGCACCTAACTCCATACGCTTCTCCGTTTGTTTCCTCGCTATTGCCGCCATAGGTGCTATTGTCACCACGTGTAGTCCTTTATACACTGTCTCCGAACTCTCCAAGCAAATTCAAGATTCCAAACCCAAGCTTGTTGTAACCGTATCGGAACTTTTCAACAAAATAGAAGAATTGAACATTGATTTACCTTTCATATTGCTCAATGATTCTTTGAACAAGTTCGCTTCTAGGTTTTTGAACTATGATGATCTAATCGGAGATTCGTACAATAGCTCTGATGAGATTCCGGCGAACAGTGTTGTTTCGCAATCCGATGTGGCGGTTATTCTGTACTCTTCAGGTACCACAGGGAGAAGTAAGGGAGTGATGTTGACTCACCGGAATTTCATAGCGACGGCGGTTGCGGGAGTTGCGGATCAAGACCGTTACGGTGAGGGGAAGAACGTGTTCCTGTGTTTCGTGCCGATGTATCACGTGATGGGATTGGCGGTTATAACGTACACGCAGTTGAGGAGAGGGAACACGGTGGTGTCGATGGGGAGATTTGATTTGGAGAAGACTTTAGTGGCGGTGGAGAAGTTTAGGGTGACGCATTTGTATGTTGCTCCACCGGTGATGGTGGAGATGATCAAGCGGCGTGATATTTTGAGCCGTTATGACTTGTCGTCGCTGAAGCAACTTGCCGGCGGTGCTGCTCCGTTGGGGAAAGATGTGATGCAAGAGTGTGCTAAGATTCTTCCCAAAGTTGAAATCCTTCAGGGGTATGGCATGACTGAAGCATGTGGACTTATTTCCTGTGAAAATCCAAAGGAACAGGAAGGAAACATTCTTTCAGGTTCAACTGGAACATTAGTTCCATGTTTAGAATCCAGAATTGTTAGTTTGGAAACATTGAATCCCCTCCCACCCAATCAAATAGGGGAAATTTGGCTTCGAGGACCTACTATAATGAAAGgatACTTTAACAATCCAGaagcaacaaaacaaaccaTTAATGATGAGGGTTGGATGATTACAGGTGATCTTGGTTATTTTGATGAAAAGGGAGAGTTATTTGTTGTGGATCGAATTAAAGAGCTCATCAAATGTAACGGGTATCAAGTGGCACCAGCTGAACTTGAAGATTTACTAATTACTCACCCTGAAATTTCTGATGCTGGGGTTATCCCATCTCCTGATGCCAAAGCGGGCGAGGTTCCGGTGGCTTATGTTGTTCGCTCACCAAATACCTCGATAACCGAAGAAGACATTCAAAAGTTTGTTGCAAAACAGgtTGCACCATATAAAAGATTGCGGCGAGTGAATTTTATAGACAAGATTCCAAGGTTACCCACAGGAAAGATCCTAAGAAAGGATCTCGTAAGTCTTGATCGACAAATAACATCAAAGTTATAG 1653 0.4386 MAKNCFDLKTMTYYSPRQPIHLPTDPNLSLTSFLFQSTSSVTDTIAIADAHSGDSLTFRQLKIEVSALSQSLLRIGIQQGDIILLFAPNSIRFSVCFLAIAAIGAIVTTCSPLYTVSELSKQIQDSKPKLVVTVSELFNKIEELNIDLPFILLNDSLNKFASRFLNYDDLIGDSYNSSDEIPANSVVSQSDVAVILYSSGTTGRSKGVMLTHRNFIATAVAGVADQDRYGEGKNVFLCFVPMYHVMGLAVITYTQLRRGNTVVSMGRFDLEKTLVAVEKFRVTHLYVAPPVMVEMIKRRDILSRYDLSSLKQLAGGAAPLGKDVMQECAKILPKVEILQGYGMTEACGLISCENPKEQEGNILSGSTGTLVPCLESRIVSLETLNPLPPNQIGEIWLRGPTIMKGYFNNPEATKQTINDEGWMITGDLGYFDEKGELFVVDRIKELIKCNGYQVAPAELEDLLITHPEISDAGVIPSPDAKAGEVPVAYVVRSPNTSITEEDIQKFVAKQVAPYKRLRRVNFIDKIPRLPTGKILRKDLVSLDRQITSKL 550
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g02366 550 Gene3D - 445 547 IPR045851 -
Tsu01g02366 550 Gene3D - 13 444 IPR042099 -
Tsu01g02366 550 CDD 4CL 22 539 - -
Tsu01g02366 550 ProSitePatterns Putative AMP-binding domain signature. 195 206 IPR020845 -
Tsu01g02366 550 Pfam AMP-binding enzyme 42 449 IPR000873 -
Tsu01g02366 550 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 5 542 - -
Tsu01g02366 550 Pfam AMP-binding enzyme C-terminal domain 458 533 IPR025110 -
Tsu01g02366 550 SUPERFAMILY Acetyl-CoA synthetase-like 22 544 - -
Tsu01g02366 550 PANTHER 4-COUMARATE:COA LIGASE-LIKE PROTEIN 5 542 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g02366 Tsu-Chr1 25370714 25375759 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g02366 13 550 Monolignol Biosynthesis Gene Families AT4G05160 57.090 0.0 622
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g02366 K01904 - qsu:112025709 679.863
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g02366 01 25370714 25375759 Tsu01g03957 01 47154467 47156764 ECH
Tsu01g02366 01 25370714 25375759 Tsu01g02366 01 25370714 25375759 ECH