Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g02343 ATGCAAGGAGAAAATTTGCGTAAGGGAACTTGGCTtcaagaagaagatgaacaatTGACTAGCTTTGTAACCCGTCTTGGCGAACGAAGGTGGGATTCCCTTGCCAAAGTAGCTGGCCTTAGGAGAAGTGGTAAAAGTTGTAGGTTAAGGTGGTTGAACTATCTTCGTCCAAATCTCAAGCATGGTCCTTATAGTGTCGAAGAAGAGAGGCTTATTATTCAACTTCAGCAGAAATGGGGAAACAAGTGGTCCAAGATTGCTCGTAGGCTTCCAGGAAGAACAGACAATGAAATCAAGAACTATTGGAGAACTCATTTACAAAAGAGAGTACAAGTTCAACAAAATggTGAGTTCATGTATAAAGTAGAAAGTGTAGCACATGATTTGAACAAGAAAAGCATAGATGTGATTTCTAACGGTGAGGGAGAGACTAAGGAAAGCTCTGTAGACAGTTTTCCTTTATCAGATTGGGGAATGGGGAATTCACCTTATGAAAATAGGATATTTGATTGGATAGTAGAATTACAAAATGGATATAGTGACAAGGAAAAGGAATTAGGACGAGATTGTAAATCAACACATGAATATAATCCCCAACAAGAATATGATACATGGGATTATTCAGGTATTTTGTGGGATTTATGA 645 0.3705 MQGENLRKGTWLQEEDEQLTSFVTRLGERRWDSLAKVAGLRRSGKSCRLRWLNYLRPNLKHGPYSVEEERLIIQLQQKWGNKWSKIARRLPGRTDNEIKNYWRTHLQKRVQVQQNGEFMYKVESVAHDLNKKSIDVISNGEGETKESSVDSFPLSDWGMGNSPYENRIFDWIVELQNGYSDKEKELGRDCKSTHEYNPQQEYDTWDYSGILWDL 214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g02343 214 Gene3D - 62 133 - -
Tsu01g02343 214 ProSiteProfiles Myb-like domain profile. 56 106 IPR001005 -
Tsu01g02343 214 PANTHER MYB TRANSCRIPTION FACTOR 2 214 - -
Tsu01g02343 214 SMART sant 60 108 IPR001005 -
Tsu01g02343 214 SMART sant 7 57 IPR001005 -
Tsu01g02343 214 SUPERFAMILY Homeodomain-like 5 102 IPR009057 -
Tsu01g02343 214 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 2 214 - -
Tsu01g02343 214 CDD SANT 63 106 IPR001005 -
Tsu01g02343 214 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 56 110 IPR017930 -
Tsu01g02343 214 Pfam Myb-like DNA-binding domain 8 55 IPR001005 -
Tsu01g02343 214 Pfam Myb-like DNA-binding domain 62 106 IPR001005 -
Tsu01g02343 214 CDD SANT 10 55 IPR001005 -
Tsu01g02343 214 Gene3D - 8 60 - -
Tsu01g02343 214 ProSiteProfiles Myb-like domain profile. 3 55 IPR001005 -
Tsu01g02343 214 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 3 55 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g02343 Tsu-Chr1 25171311 25172947 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g02343 4 111 MYB Transcription Factor Family AT5G59780 63.889 1.29e-47 154
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Tsu01g02343 Myb_DNA-binding 5.8e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g02343 K09422 - gmx:100783472 310.842
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g02343 01 25171311 25172947 Tsu01g02343 01 25171311 25172947 ECH