Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g02342 ATGAGTCAAACAACCAGCATTTTCCTAATTTTactaatttcttcatttttcacCCATGGAACATCAATGCTTAACCTCACCCTTCCTGGTCAACATCCAGACCCAGAATCTGTTGCTATAGAAGTTCACAGGAAAGTGAATGTTTCAATGGGAAGAAGAGAAATGTTATCAATATCAACCAAAGATTTTTCAACATCATGTCTAACAGGAAACCCAATTGATGATTGTTGGAAATGTGACACAGATTGGGCCAACAATCGTCAAAGGTTAGCTGATTGTGCAATAGGATTTGGACAAAATGCAAAAGGAGGAAAAGGTGGTAAATTTTACATTGTAACAGATTCCTCAGACAATGATCCTGTGAATCCAAAACCTGGTACACTTAGATATGCTGTGATACAAAATGAGCCATTGTGGATTGTGTTTCCAAGTAACATGATGATTAAGTTGTCACAAGAGCTTATTTTTAATAGCTTTAAAACTATTGATGGCCGTGGTGCTGATGTGCATATTGTGGGTGGTGGTTGCATTACTCTTCAGTATATAAGTAATGTTATTATACATAACATTCATGTTCACCATTGTCATCCCTCAGGCAACACCAATGTGCGGTCGAGTCCAGAACACTACGGATATCGAACATTATCCGATGGAGACGGAATCTCAATATTCGGATCAAGAGACATATGGATCGACCACTGCACACTCTCCCGTTGCAAAGACGGTTTAATAGACGCCGTTATGGGTTCGACAGCAATAACAATCTCTAACAACCATTTCTCACACCACAATGAGGTTATGTTACTAGGTCACAGTGATCACTACAAACCAGACTCAGCAATGCAAGTAACAATAGCATTCAACCATTTTGGTGAGCAGTTAGTTCAGAGAATGCCACGTTGCAGGCTAGGATACATCCACGTGGTTAACAATGATTTTACAAGGTGGGAGATGTATGCTATTGGTGGAAGTGGGGGACCAACTATTAATAGTCAAGGTAACCGATATACGGCTCCCGAGGATGTTGATGCGAAACAAGTCACGAAGAGGTTAGATTCCGGTGCAGGGGAATGGACTTCATGGAATTGGAGATCAGAAGGTGATGTTATGGTGAATGGTGCATTTTTTGTTGATTCAGGTGGTGAGAGTGAAGGGAATTTTGAGAAGGCTTATAGTATTGACCCTAAAGCTGTTGATCGGATTTCAGTTCTTACTATGGCTGCTGGTGTTCTTGGTGTTGCTAGGGACAATAATCTAGGAATGTGGACAAGAGCACCAAATGGTGGTGGTGATTATAGTATTTCATATTCCGGAGGACCAGAAGAGTACACTGATGACATGTCCCATAGTACAATGCTGTTGACTAATTCTCTTACTTTGACTCTTGTTCCTATCTTTGTTGTActgttttgtttgttgtttcaTGATGTTTCCCTATAA 1440 0.3944 MSQTTSIFLILLISSFFTHGTSMLNLTLPGQHPDPESVAIEVHRKVNVSMGRREMLSISTKDFSTSCLTGNPIDDCWKCDTDWANNRQRLADCAIGFGQNAKGGKGGKFYIVTDSSDNDPVNPKPGTLRYAVIQNEPLWIVFPSNMMIKLSQELIFNSFKTIDGRGADVHIVGGGCITLQYISNVIIHNIHVHHCHPSGNTNVRSSPEHYGYRTLSDGDGISIFGSRDIWIDHCTLSRCKDGLIDAVMGSTAITISNNHFSHHNEVMLLGHSDHYKPDSAMQVTIAFNHFGEQLVQRMPRCRLGYIHVVNNDFTRWEMYAIGGSGGPTINSQGNRYTAPEDVDAKQVTKRLDSGAGEWTSWNWRSEGDVMVNGAFFVDSGGESEGNFEKAYSIDPKAVDRISVLTMAAGVLGVARDNNLGMWTRAPNGGGDYSISYSGGPEEYTDDMSHSTMLLTNSLTLTLVPIFVVLFCLLFHDVSL 479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g02342 479 SUPERFAMILY Pectin lyase-like 60 385 IPR011050 -
Tsu01g02342 479 PANTHER PECTATE LYASE 18-RELATED 1 434 IPR045032 GO:0030570
Tsu01g02342 479 PANTHER PECTATE LYASE 1 434 - -
Tsu01g02342 479 Pfam Pectate lyase 154 322 IPR002022 -
Tsu01g02342 479 PRINTS Pollen allergen Amb family signature 390 413 IPR018082 -
Tsu01g02342 479 PRINTS Pollen allergen Amb family signature 153 169 IPR018082 -
Tsu01g02342 479 PRINTS Pollen allergen Amb family signature 93 110 IPR018082 -
Tsu01g02342 479 PRINTS Pollen allergen Amb family signature 117 142 IPR018082 -
Tsu01g02342 479 PRINTS Pollen allergen Amb family signature 361 385 IPR018082 -
Tsu01g02342 479 PRINTS Pollen allergen Amb family signature 319 338 IPR018082 -
Tsu01g02342 479 PRINTS Pollen allergen Amb family signature 297 316 IPR018082 -
Tsu01g02342 479 PRINTS Pollen allergen Amb family signature 217 238 IPR018082 -
Tsu01g02342 479 SMART amb_all 145 342 IPR002022 -
Tsu01g02342 479 Gene3D - 70 412 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g02342 Tsu-Chr1 25137772 25144427 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g02342 6 463 Polysaccharide Lyase AT3G53190 69.913 0.0 632
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g02342 K01728 - gmx:100815062 763.451
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g02342 01 25137772 25144427 Tsu01g02342 01 25137772 25144427 ECH
Tsu07g03916 07 45299991 45304055 Tsu01g02342 01 25137772 25144427 PCT