Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g02334 ATGAGAAACAGAAAAAATGTTTCAAACATTCCCATCACCCAAAGGCCTAGACATAAACCAGAAATTCTCAGCATGGACACTTTAATGGCCGCTGGCAACGAATTCATTTCCACATTCATCTTTGTCTTTGCCGCCACTGGCTCTCGAATAGCCGTAAACAAAATCACCGGCGATGCTGTGTTCGGTCTCATGGCTACCGCAATCGCTCAGGCGTTTTCCCTCACTGCCGCGGTTTCTGTCGGAATCAAGTACACAGACATGAATCCGTATACCTGTTGTGGGCACCTTAACCCTGCTGTCACGTTTGGCGCTTTTATAGGCGGAAATTTACACATCTTTCGTGCCTTCATCTATTGGTTTGCTCAGCTCCTTGCCTCCATTGCCGCCTGCGGGCTGCTCGTGTTCTTTCCCGGAGGACAGAGAGTGCCCGTTTTTGAACTTTCAAATGGAGTGGAAGTGCAAAACGCATTGGTGTTGGAGATGGTGATGACATTCATTTTAGTGTTCACGATGTGTGCCACTGTCTTTGACCCCAAAGCCACCAAACGTTATAATGCACCACCACTTAATATTGTGGTCAACGACCAAAACTCACCAAAGCTAGTTCAAATGCCTCCTTTGAACAGGTTTTCACCACTTGCCATTGGGCTCATAGTTGGCGCAAATATTTTGGTTGGTGGGCCTTTTGATGGAGCATCTATGAACCCGGCTTTGTCGTTTGGCGCCGCAGTCGTCACTTGGAGCTGGAGCAACCATTGGGTCTATTGGGTTGGCCCTCTCATTGGGGGTGGGATTGCtggttttgtttatgattttgtaTTTATTACTAAGTAA 834 0.4652 MRNRKNVSNIPITQRPRHKPEILSMDTLMAAGNEFISTFIFVFAATGSRIAVNKITGDAVFGLMATAIAQAFSLTAAVSVGIKYTDMNPYTCCGHLNPAVTFGAFIGGNLHIFRAFIYWFAQLLASIAACGLLVFFPGGQRVPVFELSNGVEVQNALVLEMVMTFILVFTMCATVFDPKATKRYNAPPLNIVVNDQNSPKLVQMPPLNRFSPLAIGLIVGANILVGGPFDGASMNPALSFGAAVVTWSWSNHWVYWVGPLIGGGIAGFVYDFVFITK 277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g02334 277 SUPERFAMILY Aquaporin-like 25 276 IPR023271 -
Tsu01g02334 277 PANTHER AQUAPORIN TIP1-1 208 276 - -
Tsu01g02334 277 PANTHER AQUAPORIN TIP1-1 19 189 - -
Tsu01g02334 277 Gene3D Glycerol uptake facilitator protein. 16 277 IPR023271 -
Tsu01g02334 277 PRINTS Major intrinsic protein family signature 29 48 IPR000425 GO:0015267|GO:0016020|GO:0055085
Tsu01g02334 277 PRINTS Major intrinsic protein family signature 77 101 IPR000425 GO:0015267|GO:0016020|GO:0055085
Tsu01g02334 277 PRINTS Major intrinsic protein family signature 114 133 IPR000425 GO:0015267|GO:0016020|GO:0055085
Tsu01g02334 277 PRINTS Major intrinsic protein family signature 159 177 IPR000425 GO:0015267|GO:0016020|GO:0055085
Tsu01g02334 277 PRINTS Major intrinsic protein family signature 216 238 IPR000425 GO:0015267|GO:0016020|GO:0055085
Tsu01g02334 277 PRINTS Major intrinsic protein family signature 253 273 IPR000425 GO:0015267|GO:0016020|GO:0055085
Tsu01g02334 277 Pfam Major intrinsic protein 24 192 IPR000425 GO:0015267|GO:0016020|GO:0055085
Tsu01g02334 277 Pfam Major intrinsic protein 209 270 IPR000425 GO:0015267|GO:0016020|GO:0055085
Tsu01g02334 277 PANTHER AQUAPORIN-8 208 276 IPR034294 -
Tsu01g02334 277 PANTHER AQUAPORIN-8 19 189 IPR034294 -
Tsu01g02334 277 ProSitePatterns MIP family signature. 95 103 IPR022357 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g02334 Tsu-Chr1 25059525 25061495 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g02334 19 277 Major Intrinsic Protein MIP AT3G26520 51.908 1.62e-80 241
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g02334 K09873 - gmx:100820403 267.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu07g03922 07 45341525 45343715 Tsu01g02334 01 25059525 25061495 PCT