Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Tsu01g02333 | ATGTTGGTTTCAAAGGATCATATAACACAACAACAAATCATAAAAGGTAAGCGAACGAAGCGTCAAAGGTTACCTTCTCCACTTAGGTTAGCCATGCCGGCCGCGTCAAATAATTCTTACAATGAAGGTACAAGTTTTAATGATAACATGTACAACAATGACAATTCGAGAGGGATTGAATTTGTTAAAATTGAATCGCATAACCgatcagaagaagaaaaagaagaagaagatatggcgaattgtttgattttattagCTCAAGGTCATAATCGTCGTCATGATCATCAAAATCAAGAACATGTGTCAAATCATCATGATTACAATAACAATAAACCTTCTtcaaatttttatgtttatgaatGCAAGACTTGCAATCGTTGCTTCCCTTCATTTCAAGCACTTGGTGGTCATAGAGCAAGTCATAGCAAACCTAATAAGGTAAATTGTAACAATATTGTTACACAACAAAAGCAAGAAGTTACAACATCTCCTTTTGTTGATGATCATTATGATGCAACCATGAATACCATACTCTCATTGCAAGCCTATACGGCCGCAACCCCAATTACtactattactactactactgctgctacaaaaaaatcaaaagttcaCGAGTGTTCGATATGTGGTGCCGAGTTCTCATCTGGGCAAGCATTGGGAGGACATATGCGACGGCATAGAACTCTTGTGAgcacatcaacaacaacaacggcaacaacaacaacaccatcTGTGAGTTTGAGTATCGGTAGCCGTAGCCCTAAATATCATGAAGCAAAGAAACCAAGAATTAGTTTGAAGTTGGATTTGAATCTTCCAGCTCCAGAAGTTGATCAAAGAGATccatcaaaattttcatttcagCAGCCTAGAGAAAATGTTATTGCTTTCTCTAATTCTTCTTTGGTGGATTGCCATTACTAA | 930 | 0.3097 | MLVSKDHITQQQIIKGKRTKRQRLPSPLRLAMPAASNNSYNEGTSFNDNMYNNDNSRGIEFVKIESHNRSEEEKEEEDMANCLILLAQGHNRRHDHQNQEHVSNHHDYNNNKPSSNFYVYECKTCNRCFPSFQALGGHRASHSKPNKVNCNNIVTQQKQEVTTSPFVDDHYDATMNTILSLQAYTAATPITTITTTTAATKKSKVHECSICGAEFSSGQALGGHMRRHRTLVSTSTTTTATTTTPSVSLSIGSRSPKYHEAKKPRISLKLDLNLPAPEVDQRDPSKFSFQQPRENVIAFSNSSLVDCHY | 309 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Tsu01g02333 | 309 | PANTHER | ZINC FINGER PROTEIN ZAT5 | 9 | 309 | - | - | |
Tsu01g02333 | 309 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 122 | 142 | IPR013087 | - | |
Tsu01g02333 | 309 | PANTHER | C2H2-TYPE ZINC FINGER PROTEIN | 9 | 309 | - | - | |
Tsu01g02333 | 309 | SMART | c2h2final6 | 206 | 228 | IPR013087 | - | |
Tsu01g02333 | 309 | SMART | c2h2final6 | 120 | 142 | IPR013087 | - | |
Tsu01g02333 | 309 | MobiDBLite | consensus disorder prediction | 1 | 23 | - | - | |
Tsu01g02333 | 309 | Pfam | C2H2-type zinc finger | 205 | 229 | - | - | |
Tsu01g02333 | 309 | Pfam | C2H2-type zinc finger | 119 | 145 | - | - | |
Tsu01g02333 | 309 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 208 | 228 | IPR013087 | - | |
Tsu01g02333 | 309 | SUPERFAMILY | beta-beta-alpha zinc fingers | 119 | 228 | IPR036236 | - | |
Tsu01g02333 | 309 | Gene3D | Classic Zinc Finger | 187 | 249 | - | - | |
Tsu01g02333 | 309 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 206 | 228 | IPR013087 | - | |
Tsu01g02333 | 309 | MobiDBLite | consensus disorder prediction | 232 | 253 | - | - | |
Tsu01g02333 | 309 | MobiDBLite | consensus disorder prediction | 232 | 260 | - | - | |
Tsu01g02333 | 309 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 120 | 147 | IPR013087 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Tsu01g02333 | Tsu-Chr1 | 25041396 | 25042325 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Tsu01g02333 | 4 | 309 | C2H2 Transcription Factor Family | AT5G03510 | 39.748 | 5.84e-57 | 184 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | C2H2 | Tsu01g02333 | zf-C2H2_6 | 6.6e-11 | CL0361 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Tsu01g02333 | - | - | mtr:MTR_1g062780 | 422.935 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Tsu01g03947 | 01 | 47084248 | 47085349 | Tsu01g02333 | 01 | 25041396 | 25042325 | ECH | |
Tsu01g02333 | 01 | 25041396 | 25042325 | Tsu01g03947 | 01 | 47084248 | 47085349 | ECH | |
Tsu01g02333 | 01 | 25041396 | 25042325 | Tsu01g02333 | 01 | 25041396 | 25042325 | ECH | |
Tsu02g04632 | 02 | 55326999 | 55328017 | Tsu01g02333 | 01 | 25041396 | 25042325 | ECH | |
Tsu02g03676 | 02 | 41378128 | 41379152 | Tsu01g02333 | 01 | 25041396 | 25042325 | ECH | |
Tsu01g02333 | 01 | 25041396 | 25042325 | Tsu02g04632 | 02 | 55326999 | 55328017 | ECH | |
Tsu01g02333 | 01 | 25041396 | 25042325 | Tsu02g03676 | 02 | 41378128 | 41379152 | ECH |