Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g02333 ATGTTGGTTTCAAAGGATCATATAACACAACAACAAATCATAAAAGGTAAGCGAACGAAGCGTCAAAGGTTACCTTCTCCACTTAGGTTAGCCATGCCGGCCGCGTCAAATAATTCTTACAATGAAGGTACAAGTTTTAATGATAACATGTACAACAATGACAATTCGAGAGGGATTGAATTTGTTAAAATTGAATCGCATAACCgatcagaagaagaaaaagaagaagaagatatggcgaattgtttgattttattagCTCAAGGTCATAATCGTCGTCATGATCATCAAAATCAAGAACATGTGTCAAATCATCATGATTACAATAACAATAAACCTTCTtcaaatttttatgtttatgaatGCAAGACTTGCAATCGTTGCTTCCCTTCATTTCAAGCACTTGGTGGTCATAGAGCAAGTCATAGCAAACCTAATAAGGTAAATTGTAACAATATTGTTACACAACAAAAGCAAGAAGTTACAACATCTCCTTTTGTTGATGATCATTATGATGCAACCATGAATACCATACTCTCATTGCAAGCCTATACGGCCGCAACCCCAATTACtactattactactactactgctgctacaaaaaaatcaaaagttcaCGAGTGTTCGATATGTGGTGCCGAGTTCTCATCTGGGCAAGCATTGGGAGGACATATGCGACGGCATAGAACTCTTGTGAgcacatcaacaacaacaacggcaacaacaacaacaccatcTGTGAGTTTGAGTATCGGTAGCCGTAGCCCTAAATATCATGAAGCAAAGAAACCAAGAATTAGTTTGAAGTTGGATTTGAATCTTCCAGCTCCAGAAGTTGATCAAAGAGATccatcaaaattttcatttcagCAGCCTAGAGAAAATGTTATTGCTTTCTCTAATTCTTCTTTGGTGGATTGCCATTACTAA 930 0.3097 MLVSKDHITQQQIIKGKRTKRQRLPSPLRLAMPAASNNSYNEGTSFNDNMYNNDNSRGIEFVKIESHNRSEEEKEEEDMANCLILLAQGHNRRHDHQNQEHVSNHHDYNNNKPSSNFYVYECKTCNRCFPSFQALGGHRASHSKPNKVNCNNIVTQQKQEVTTSPFVDDHYDATMNTILSLQAYTAATPITTITTTTAATKKSKVHECSICGAEFSSGQALGGHMRRHRTLVSTSTTTTATTTTPSVSLSIGSRSPKYHEAKKPRISLKLDLNLPAPEVDQRDPSKFSFQQPRENVIAFSNSSLVDCHY 309
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g02333 309 PANTHER ZINC FINGER PROTEIN ZAT5 9 309 - -
Tsu01g02333 309 ProSitePatterns Zinc finger C2H2 type domain signature. 122 142 IPR013087 -
Tsu01g02333 309 PANTHER C2H2-TYPE ZINC FINGER PROTEIN 9 309 - -
Tsu01g02333 309 SMART c2h2final6 206 228 IPR013087 -
Tsu01g02333 309 SMART c2h2final6 120 142 IPR013087 -
Tsu01g02333 309 MobiDBLite consensus disorder prediction 1 23 - -
Tsu01g02333 309 Pfam C2H2-type zinc finger 205 229 - -
Tsu01g02333 309 Pfam C2H2-type zinc finger 119 145 - -
Tsu01g02333 309 ProSitePatterns Zinc finger C2H2 type domain signature. 208 228 IPR013087 -
Tsu01g02333 309 SUPERFAMILY beta-beta-alpha zinc fingers 119 228 IPR036236 -
Tsu01g02333 309 Gene3D Classic Zinc Finger 187 249 - -
Tsu01g02333 309 ProSiteProfiles Zinc finger C2H2 type domain profile. 206 228 IPR013087 -
Tsu01g02333 309 MobiDBLite consensus disorder prediction 232 253 - -
Tsu01g02333 309 MobiDBLite consensus disorder prediction 232 260 - -
Tsu01g02333 309 ProSiteProfiles Zinc finger C2H2 type domain profile. 120 147 IPR013087 -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Tsu01g02333 Tsu-Chr1 25041396 25042325 Dispersed/Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g02333 4 309 C2H2 Transcription Factor Family AT5G03510 39.748 5.84e-57 184
       

Transcription factors information


Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Tsu01g02333 zf-C2H2_6 6.6e-11 CL0361
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g02333 - - mtr:MTR_1g062780 422.935
       

Event-related genes


Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g03947 01 47084248 47085349 Tsu01g02333 01 25041396 25042325 ECH
Tsu01g02333 01 25041396 25042325 Tsu01g03947 01 47084248 47085349 ECH
Tsu01g02333 01 25041396 25042325 Tsu01g02333 01 25041396 25042325 ECH
Tsu02g04632 02 55326999 55328017 Tsu01g02333 01 25041396 25042325 ECH
Tsu02g03676 02 41378128 41379152 Tsu01g02333 01 25041396 25042325 ECH
Tsu01g02333 01 25041396 25042325 Tsu02g04632 02 55326999 55328017 ECH
Tsu01g02333 01 25041396 25042325 Tsu02g03676 02 41378128 41379152 ECH