Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g02320 ATGGAAACCACCAACCAGAACCTCGAAACTGAAACTTTCAAGATGCAGCAGCAACGGCGACGAGGTCAGTTGGTGGTGAATGGTTACTTCGTTTACACACGACGAAAGAGGATCGAGCATGATTCCGACAACGAAACAGCGAAGAGGCTTAAAACCGATGAAAATGAACAAGTTAAGGTGAAAATTGGTGAAGCGGTGAAGAACGACGTCGTTTTATGGACTTCGAAACGGCAGCGGAGACCGTCGTTTAAGTTGAAGGTTGAATCTGAAGATGATGGTTCTGCTGATAAGGTAGTTGCTCGCGTTGTGAATACGAAGAAGAGCGTTGCGTTTAACGAGAAGCTATTGTCTGTGAAGGAGCTCTTTGATACTGGTTTGCTCGATGGTGTTCCAGTTGTTTACGTCGGTTGTAAGAAGGAGGCTTCAGATTCGGGATTGCAGGGTGTAATTGCTGGTGGGGGGATATTGTGCTCGTGCTGTCTGTGCAATGGACGTAGAATTATTCCCCCCTCCCAATTTGAGATTCATGCCTGCAAAATATATAAGAGGGCAACGCAGTATATTTGCTTTGAAAATGGGAAGAGTCTGCTTGAACTATTGGGAGTTTGCAGGGCAGCTCCCTTACATGCTTTGGAGGCCACTATTCAAAACTTTCTTTGTTTACCACcggaagaaaaatattttacttgCAGGAGTTGCAGAGGGTGTTTCCCTGTTTCAACTGTGAAAAGAGTGGGGCTTATATGCCATTCTTGCATGGAAACAAGTAAATCTGAAAATGGTTCTATTCGTGCGGTTGGCAAAAGAGTCagGACTCCTCGACCGTATTTGTTCTCTAGTCCATCTAGTATTTCTGAAACGTGTGTCTCGTCACAAACTAAGagacaaaagaagaagaaaacaaaGTCATCAAAACGGGTTAGCATGTCAAAATCTTCCAGGAAGAGTGCTTCCGGGCCTGTTCTTATCCAGAAGAAAAGTTTGTGCAACATGGAAACAAAGTCATCAAAACTGACAGTCAAGTTGAAGATTGCTCCAATTACGTCAAATTCAAAGTGTGCATCTCCACAAAATAAGAGTCAATGGAAGATCAATAAGAAGCACCAGCGAttgcataaaataatttttgaagaaGATGGATTGCCTGATGGAGCTGAAGTAGCTTATTATGCCCGTGGACAGAAATATCTTGAGGGTATTAAAAAGAAGTCTGGAATTATTTGTCGATGCTGCAACACTGAGATCAGCCCCGCACAGTTTGAGATTCATGCAGGGTGGGCTTATCGTAGGAAGCCTTATGCATACATCTACACTTCGAATGGGGTGTCTCTCCACGAGTTGGCATTATTCCTTTCAAAAGATCGCAAATGCACTGCAAAATATAATGATCATGCATGCATTGTTTGTTGGGATGGTGGAAATCTGTTGCTCTGTGATGGATGCCCAAGGGCATTTCATAAAGAATGTGCATCTGTATCAAGTACTCCACGACGTAGTCGGTACTGTCCAATCTGTCAACACAAGTTCCTTGGAGAAGGATCTGTGGCTCTCAATCCTGATGCTGTGGCAGCTGGAAGGGTTGAAGGAGTTGATCCTATAGAACAGATTGCCAAGAGATGCATTCGCATAGTGAAAGACATCGAAGCTGAGATTGGTGGATGTGCTGGTGGATGTGCTTTATGCAGAGGTTCTGACTTCAGCAGATCAGGATTTGGTCCACGTACAATAATAATATGTGATCAGTGTGAAAAGGAATATCATGTGGGCTGTTTGAGGGATCATAAAATGGCATTTTTGAAGGAATTGCCAGAAGGGGATTGGCTTTGCTGCAATGATTGCACAAGAATACATTCTATTTTAGGGAACCTCCTAGTTAGGGTGGCTGAGAGTCTCCCTGAATCTCTTTTAGACGTTATAAAGAAAAAGCAAGAGGAAAGATATTTGGAACCCCTTAATGAGATTGATATAAGATGGAAACTTGTTAATGGCAAAGTTGCTTCTCCTGAAACAAGGCCATTGCTTTTGGAGGCACTGTCAATATTCAACGAATGCTTTGATCCTATAGTTGACGCAGCTACTGAACGTGACCTTATTCCTTCCATGGTTTATGGAAGGAATTTGCAGACTCAGGATTTTGGAGGAATGTATTGTGCATTATTAATGGTCAAGTAA 2172 0.4185 METTNQNLETETFKMQQQRRRGQLVVNGYFVYTRRKRIEHDSDNETAKRLKTDENEQVKVKIGEAVKNDVVLWTSKRQRRPSFKLKVESEDDGSADKVVARVVNTKKSVAFNEKLLSVKELFDTGLLDGVPVVYVGCKKEASDSGLQGVIAGGGILCSCCLCNGRRIIPPSQFEIHACKIYKRATQYICFENGKSLLELLGVCRAAPLHALEATIQNFLCLPPEEKYFTCRSCRGCFPVSTVKRVGLICHSCMETSKSENGSIRAVGKRVRTPRPYLFSSPSSISETCVSSQTKRQKKKKTKSSKRVSMSKSSRKSASGPVLIQKKSLCNMETKSSKLTVKLKIAPITSNSKCASPQNKSQWKINKKHQRLHKIIFEEDGLPDGAEVAYYARGQKYLEGIKKKSGIICRCCNTEISPAQFEIHAGWAYRRKPYAYIYTSNGVSLHELALFLSKDRKCTAKYNDHACIVCWDGGNLLLCDGCPRAFHKECASVSSTPRRSRYCPICQHKFLGEGSVALNPDAVAAGRVEGVDPIEQIAKRCIRIVKDIEAEIGGCAGGCALCRGSDFSRSGFGPRTIIICDQCEKEYHVGCLRDHKMAFLKELPEGDWLCCNDCTRIHSILGNLLVRVAESLPESLLDVIKKKQEERYLEPLNEIDIRWKLVNGKVASPETRPLLLEALSIFNECFDPIVDAATERDLIPSMVYGRNLQTQDFGGMYCALLMVK 723
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g02320 723 MobiDBLite consensus disorder prediction 277 320 - -
Tsu01g02320 723 PANTHER ACYL-COA N-ACYLTRANSFERASE WITH RING/FYVE/PHD-TYPE ZINC FINGER DOMAIN-CONTAINING PROTEIN 9 722 - -
Tsu01g02320 723 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 452 541 IPR013083 -
Tsu01g02320 723 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 556 616 IPR013083 -
Tsu01g02320 723 SMART PHD_3 557 614 IPR001965 -
Tsu01g02320 723 SMART PHD_3 465 506 IPR001965 -
Tsu01g02320 723 ProSiteProfiles Zinc finger PHD-type profile. 463 508 IPR019787 -
Tsu01g02320 723 MobiDBLite consensus disorder prediction 277 291 - -
Tsu01g02320 723 PANTHER AUTOIMMUNE REGULATOR 9 722 - -
Tsu01g02320 723 Pfam Tify domain binding domain 148 200 IPR032308 -
Tsu01g02320 723 Pfam Tify domain binding domain 402 448 IPR032308 -
Tsu01g02320 723 MobiDBLite consensus disorder prediction 294 309 - -
Tsu01g02320 723 SUPERFAMILY FYVE/PHD zinc finger 558 611 IPR011011 -
Tsu01g02320 723 SUPERFAMILY FYVE/PHD zinc finger 461 509 IPR011011 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g02320 Tsu-Chr1 24773618 24782312 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g02320 107 722 PHD Transcription Factor Family AT2G36720 49.128 0.0 597
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g02320 - - gmx:100798276 941.028
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu07g03940 07 45505627 45515133 Tsu01g02320 01 24773618 24782312 PCT