Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g02313 ATGTCAGTGCTAATGGTCACCAGTTTAGGGGACCTCGTAATCGATTTACACACTCAAAAGTGTCCTTTAACCTGCAAGAACTTCTTGAAGCTATGCAAGATTAAGTACTACAATGGTTGTTTATTTCACAATGTTCAAAAGGATTTCACTGCCCAAACTGGTGATCCAACTGGAACTGGCACTTCTGGTGATTCTATCTACAAGTTTCTTTATGGTGATCAAGCTCGATTTTTCAATGATGAGATTCATATTGATCTAAAGCATTCTAAGACTGGAACTGTTGCCATGGCAAGTGCGGGGGAGAATATGAATGCTTCACAGTTCTATATAACTCTACGTGATGACCTTGATTACCTTGACGGAAAACACACAGTTTTTGGTGAGGTAGCCGAAGGATTTGAGACTTTGACTAGAATAAATGAGGCTTATGCGGATGGAAAGGGCAGACCATTTAAAAATATCCGAATCAAGCACACTTACATCCTGGAGGATCCCTATGATGATCCTCCTCAGCTGCCTGAGTTCATTCCTGAAGGTTCACCAGAAGGAAAACCTAAAGACGAGGTTGATGATGAAGTCCGGCTTGAAGATGATTGGGTGCCCATGGATGAACAATTAAACCCAGGAGaacttgaagaagttattagATCAAAGGAAGCACATTCTAGGGCAGTTGTGCTAGAGAGTATTGGGGATATTCCTGATGCTGAGGTTAAGCCTCCAGATAATGTACTATTTGTCTGTAAATTGAATCCGGTTACTGAGGACGAGGACTTGCATACAATATTTTCACGCTTCGGAACTGTATCATCGGCTGAAATCATCCGTGATCACAAGACTGGTGACAGTTTATGCTATGCTTTTATAGAGTTTGAGGACAAACAGGCATGTGAACAAGCATATTTTAAGATGGATAATGCTTTGATTGATGATCGAAGGATACACGTGGATTTTAGTCAAAGTGTTGCAAAACTGTGGTCACAATACATGCGAAAAGATAATAAGGgtggtggttgcttcaaatgtgGTTCCACTGATCATATTGCCAGGGATTGCACTGGAGATGCTACAATGAAACAATCAACAAAATTCATCTTGAAGGACAATAATTCCCAACGAGGTGGACATAATGCAAGATATGAAATGGTTTTTGATGGAGATAACACAGAAAGTCCAAGGCGTGAAACAAAACACCAAAGACATGACAGGGATGACCGAGATGATAAAATAGGTAGGAGGGAAAATTTTAAAGACCATAGTCATAGAGATCGTAGTGATCAGGAGATGGCAGGCTCAAATAACAGAGATAGGTATGCCAACAGAAGCAGAGGGCTTGAAGGAAATGGAGATGATAAAGCACGACTGGAAAGAGGTGCGAGAGGTTCGGATCCTTTTGCTGGCAAGAAAGACAGAGAAAGGCAAATGGGAAGACAGAGAGATGATGACTACCGACGGAAAGATGAGCTAGACTCGAGGAAAAGAGACTTAGGTGATAGATACACAGAAAGCCGGTCTAGTCGAGATGATAGGAGAAAAACAGATGCTAGCCATTTGGATAAGAGGAATGACAAAGATTATAGGAAGAGAACTGAAGACAGTGAAAGCCAAGATGTGAAGATTGATTCAGGACGACGAAAACGAAGCCCAGATGTTGACGATTACAAACGTAGAAGGAATGATGAGGATTGCAGAGAAGATTTAAAGATTGATTCCAGACGAAGAAAACAAAGCCCAGATAATGGGGACTACAAACGTGGAGGGGACCATGAGGATTACAAACATAGGAGGGAAGATCGTGGACATAGAAGACATGATACTGATAGAAGGCATCATGGCGACAAAAGATGA 1848 0.4064 MSVLMVTSLGDLVIDLHTQKCPLTCKNFLKLCKIKYYNGCLFHNVQKDFTAQTGDPTGTGTSGDSIYKFLYGDQARFFNDEIHIDLKHSKTGTVAMASAGENMNASQFYITLRDDLDYLDGKHTVFGEVAEGFETLTRINEAYADGKGRPFKNIRIKHTYILEDPYDDPPQLPEFIPEGSPEGKPKDEVDDEVRLEDDWVPMDEQLNPGELEEVIRSKEAHSRAVVLESIGDIPDAEVKPPDNVLFVCKLNPVTEDEDLHTIFSRFGTVSSAEIIRDHKTGDSLCYAFIEFEDKQACEQAYFKMDNALIDDRRIHVDFSQSVAKLWSQYMRKDNKGGGCFKCGSTDHIARDCTGDATMKQSTKFILKDNNSQRGGHNARYEMVFDGDNTESPRRETKHQRHDRDDRDDKIGRRENFKDHSHRDRSDQEMAGSNNRDRYANRSRGLEGNGDDKARLERGARGSDPFAGKKDRERQMGRQRDDDYRRKDELDSRKRDLGDRYTESRSSRDDRRKTDASHLDKRNDKDYRKRTEDSESQDVKIDSGRRKRSPDVDDYKRRRNDEDCREDLKIDSRRRKQSPDNGDYKRGGDHEDYKHRREDRGHRRHDTDRRHHGDKR 615
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g02313 615 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 16 31 IPR002130 GO:0000413|GO:0003755
Tsu01g02313 615 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 92 107 IPR002130 GO:0000413|GO:0003755
Tsu01g02313 615 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 121 136 IPR002130 GO:0000413|GO:0003755
Tsu01g02313 615 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 42 54 IPR002130 GO:0000413|GO:0003755
Tsu01g02313 615 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 7 161 IPR002130 GO:0000413|GO:0003755
Tsu01g02313 615 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 243 321 IPR000504 GO:0003723
Tsu01g02313 615 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 245 315 IPR000504 GO:0003723
Tsu01g02313 615 Gene3D - 325 380 - -
Tsu01g02313 615 SMART rrm1_1 244 317 IPR000504 GO:0003723
Tsu01g02313 615 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 3 159 IPR002130 GO:0000413|GO:0003755
Tsu01g02313 615 ProSiteProfiles Zinc finger CCHC-type profile. 339 352 IPR001878 GO:0003676|GO:0008270
Tsu01g02313 615 MobiDBLite consensus disorder prediction 167 188 - -
Tsu01g02313 615 Gene3D - 1 172 IPR029000 -
Tsu01g02313 615 CDD cyclophilin_RRM 4 169 IPR035538 -
Tsu01g02313 615 Pfam Zinc knuckle 338 353 IPR001878 GO:0003676|GO:0008270
Tsu01g02313 615 Gene3D - 182 324 IPR012677 -
Tsu01g02313 615 MobiDBLite consensus disorder prediction 439 615 - -
Tsu01g02313 615 MobiDBLite consensus disorder prediction 384 615 - -
Tsu01g02313 615 MobiDBLite consensus disorder prediction 386 431 - -
Tsu01g02313 615 CDD RRM_PPIL4 240 322 - -
Tsu01g02313 615 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-LIKE 4 1 520 IPR035542 -
Tsu01g02313 615 SUPERFAMILY RNA-binding domain, RBD 229 331 IPR035979 GO:0003676
Tsu01g02313 615 SUPERFAMILY Cyclophilin-like 1 178 IPR029000 -
Tsu01g02313 615 SMART c2hcfinal6 338 354 IPR001878 GO:0003676|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g02313 Tsu-Chr1 24667083 24676960 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g02313 7 166 U-box Gene Family AT5G67530 40.625 2.64e-30 124
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g02313 K12735 - gmx:100776900 904.82