Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g02311 ATGgACATAATGTTGGTTCCTCCATGGCTCAAACCACTTCTTAACACACCATTTTTCAATGTGTGTCGGATTCACGGCGACGCCGCAAGAAGTGAATGTAACATGTTTTGTTTAGATTGTAATGTTGATGCCTTTTGCTTCTATTGTCGTTCTTCAAGACACAAGGATCATCAAGTCATTCAGATAAGAAGATCTTCTTATCACGATGTAGTGAGGGTGGGTGAAATTCAGAAAATGTTGGATATTAGTGGAGTTCAAACATATGTGATTAATAGTGCTAGAGTTTTGTTTCTAAATGAAAGGCCTCAACAAAAAATTGGAAAAGCAGTTTCTTACATTTGTGAGATTTGTGGAAGAAGCCTTTTAGACAATGTTCGTTTCTGTTCTTTGGGATGTAAGCTTGTAGGAATAAAGAGAAATGGGAATGCAAGCTTTGTTTTAGATGCTAATAATAACAAGGAAGTATCAACAATGGAAGAAGGAATGTCAAGACAACAGGAAGAATTGCTTGAAGGCTCACAACAAGGCATGTATCCAACCACACCTCCTTCAAATGCAAGGAGAAGAAAAGGGATTCCTCATAGGGCTCCTTTTGGATCCTAA 603 0.3781 MDIMLVPPWLKPLLNTPFFNVCRIHGDAARSECNMFCLDCNVDAFCFYCRSSRHKDHQVIQIRRSSYHDVVRVGEIQKMLDISGVQTYVINSARVLFLNERPQQKIGKAVSYICEICGRSLLDNVRFCSLGCKLVGIKRNGNASFVLDANNNKEVSTMEEGMSRQQEELLEGSQQGMYPTTPPSNARRRKGIPHRAPFGS 200
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g02311 200 Gene3D Classic Zinc Finger 20 65 - -
Tsu01g02311 200 SUPERFAMILY B-box zinc-binding domain 19 64 - -
Tsu01g02311 200 Pfam PLATZ transcription factor 63 134 IPR006734 -
Tsu01g02311 200 MobiDBLite consensus disorder prediction 160 200 - -
Tsu01g02311 200 PANTHER PLATZ TRANSCRIPTION FACTOR FAMILY PROTEIN 3 199 - -
Tsu01g02311 200 MobiDBLite consensus disorder prediction 167 182 - -
Tsu01g02311 200 PANTHER PLATZ TRANSCRIPTION FACTOR FAMILY PROTEIN 3 199 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g02311 Tsu-Chr1 24646353 24647654 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF PLATZ Tsu01g02311 PLATZ 2.7e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g02311 - - gmx:100809455 333.183
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu07g03944 07 45547709 45551059 Tsu01g02311 01 24646353 24647654 PCT