Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g02309 ATGGAAGAATCTTCAACAACatctccaccaccaccagcaACTAAAAGCTGGGCCGATCAAGCAGACGACGAAGATGCCAATCCATCCTCAAGCTCCGCCGCCGAAACCGAACCACCTTCGATCGATGAATTAAACATCGACGTGAACAAGAAATCGCCTTCTAAAATGTTAGACGATCCCGATGACTCCAATATTCAAGCGGTTACATCTGGCGACACTCCTTACACGTCGGCGGCAACATTCGAAGAGTTATCACTCTCGCCTGAGCTTTTGAAGGGACTCTATGTGGAGATGAAGTTTGAAAAACCTAGCAAAATTCAAGCTGTAAGCTTACCAATGATTCTTAATCCTCCACATAGGGATTTGATAGCACAGGCACATAATGGTTCAGGGAAAACTACTTGTTTTGTGCTTGGGATGCTTAGTCGTGTTGATCCAACTCAGCAAAGTACTCAAGCTCTTTGCATTTGCCCTACTAGAGAGTTAGCTATTCAGAATGTTGAGGTTCTACGTAAGATGGGGAAGTACACCGGGATTAGCTCAGAATGTTCAATTCCTATGGACAAAAGGGATTCAATTCCGATATCAAAAAGGCCGCCTATTATGGCTCAGGTTGTTATTGGTACTCCTGGCACGATTAAGAATTTGATGACTTACAAGAAACTTGGGGTGACAAGATTGAAGATTCTTGTTTTTGATGAGGCCGATCAAATGCTTGCCGAGGATGGATTTAAAGATGATTCTCTGAGGATaatgaaagaaatagaaaaattcaattCTAACTGTCAGGTTCTTCTGTTTTCTGCTACGTTTAATGATATTGTCAAGAATTTTGTTACAAGGATTGTTGAGAAGAAGGAGCATAATAAACTTTTTGTGAAGAAAGAGGAGCTATCTTTAGATGCAGTGAAGCAGTACAAAGTTCGTGTTTCTGATGAAACTGAGAAGattgaagtgattaaaaattatatatttgaaataggAGAGAATGTGGGGCAAACTATTATATTTGTACGAACTAGAGATAGTGCAAAAATGTTGCATAAAGCTCTTGTTGATTTAGGCTATGAGGTTACTTCCATACAAGGTAATCTTGAACATGACCAGAGAGACAAGATTATCAAGGAGTTTAAAGATGGTTTGACTCAGGTTCTTATATCAACTGATGTTCTTGCCCGTGGCTTTGATCAGCAACAGATTAATTTGGTTATCAACTACGATCTTCCACTGAAGTACGCTGCTGGGTACAACCGTGGCCGTGAACTTGAGCCTGATTTTGAGGTGTATTTGCACAGGGTTGGTAGGGCTGGACGATTTGGGCGCAAGGGGGCTGTATTTAACCTGATATGTGGTGAAAGGGATGAAAAGGTCATGTCAAAGATTGAAAACCATTTTGGCACACATATAAAAGAGGTGCAACAAAATAGTGTTGACGACTATAAAGCTGCTCTTAAGGAAGCTGGTTTACTGTTTTAA 1476 0.3909 MEESSTTSPPPPATKSWADQADDEDANPSSSSAAETEPPSIDELNIDVNKKSPSKMLDDPDDSNIQAVTSGDTPYTSAATFEELSLSPELLKGLYVEMKFEKPSKIQAVSLPMILNPPHRDLIAQAHNGSGKTTCFVLGMLSRVDPTQQSTQALCICPTRELAIQNVEVLRKMGKYTGISSECSIPMDKRDSIPISKRPPIMAQVVIGTPGTIKNLMTYKKLGVTRLKILVFDEADQMLAEDGFKDDSLRIMKEIEKFNSNCQVLLFSATFNDIVKNFVTRIVEKKEHNKLFVKKEELSLDAVKQYKVRVSDETEKIEVIKNYIFEIGENVGQTIIFVRTRDSAKMLHKALVDLGYEVTSIQGNLEHDQRDKIIKEFKDGLTQVLISTDVLARGFDQQQINLVINYDLPLKYAAGYNRGRELEPDFEVYLHRVGRAGRFGRKGAVFNLICGERDEKVMSKIENHFGTHIKEVQQNSVDDYKAALKEAGLLF 491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g02309 491 Pfam DEAD/DEAH box helicase 105 277 IPR011545 GO:0003676|GO:0005524
Tsu01g02309 491 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 58 471 - -
Tsu01g02309 491 Gene3D - 58 296 IPR027417 -
Tsu01g02309 491 Gene3D - 300 484 IPR027417 -
Tsu01g02309 491 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 79 108 IPR014014 GO:0003724
Tsu01g02309 491 CDD DEADc_DDX19_DDX25 86 283 - -
Tsu01g02309 491 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 319 480 IPR001650 -
Tsu01g02309 491 SMART ultradead3 99 306 IPR014001 -
Tsu01g02309 491 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 113 289 IPR014001 -
Tsu01g02309 491 CDD SF2_C_DEAD 303 449 - -
Tsu01g02309 491 MobiDBLite consensus disorder prediction 23 38 - -
Tsu01g02309 491 PANTHER DEAD-BOX HELICASE DBP80 58 471 - -
Tsu01g02309 491 SMART helicmild6 345 440 IPR001650 -
Tsu01g02309 491 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 151 456 IPR027417 -
Tsu01g02309 491 MobiDBLite consensus disorder prediction 1 71 - -
Tsu01g02309 491 Pfam Helicase conserved C-terminal domain 316 440 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g02309 Tsu-Chr1 24632880 24640341 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g02309 80 478 Eukaryotic Initiation Factors Gene Family AT1G72730 35.891 2.26e-71 231
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g02309 K18655 - gmx:100778091 730.709
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g02309 01 24632880 24640341 Tsu01g02309 01 24632880 24640341 ECH