Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g02307 ATGGCGGATTCTGAGAAAGAAACGGCTAAACCAGCGTCAATTTACGTCGGCGATCTTCACTCCGATGTAACCGATGCTCTTCTGTATAAGGCATTTTCGGAATTCAAGAGCATCACTTCCGTTCGCGTTTGTAGGGATTCAGCGACTGGGAAGTCTCGCTGTTACGGTTACGTCAACTTCACCTCTCATCAAGAAGCAATTCGTGCAATCGAACTGAAGAATCATTCTATACTCAATGGAAAAGTGATAAGGGTCATGTGGTCAAGTCGTGATGCTGATGCAAGGAAAAGTGGCAGAGGGAATGTGTTTGTTAAGAACTTAGCAGAATCCATAGATAATGTGGGACTACatgatttatttcaaaaatatggGAATATTTTGTCCAGCAAAATTGTCATGTCTGAGGATGGAAAGAGCAAAGGGTATGGTTATATCCAGTTTGATTCAGAGGAGTCTGCAAATGAGGCTATCCAGAAAATGAATGGATCTACTGTGAAAGATAAGCAGATATATGTTGGGAAATTTATCAGAAAAAGTGAGCGCTCTTTTCCTGACCCGGATGCCAAAGATACAAACTTGTACGTTAAGAACTTGGATCCAGATATTACCAAAGAACATCTTCAAGAAAAGTTCTCCTCTTTCGGAAAGATTAGTAGCTTGGCTATTGCAAAGGATGGGAATGGGTTGTCAAAAGGCTTTGGATTTGTGAACTATGACAACCCAGATGATGCTAGACGAGCAATGGAAGCAATGAATGGATCACAATTTgTAGGTTCAAAGAACTTGTATGTTGCAAGGGCACAAAAAAAGGCTGAACGTGAGGAGATATTGCTTCACTTGTTTGTGGAAAAATGCAAGgaacaaaacttgaaatacAAGGGATCAAACATTTATGTGAAGAACATTGCTGATAGTGTTAGTGATGAAGAACTACGGGACCTGTTCAGTGCATGTGGCACAATATTGTCTGCAAAAATTATGCGAGATGACAAAGGGATTAGCAAGGGGTTTGGTTTTGTCTGTTTTTCTACCCTGGATGAGGCTGTTAAGTCTGTGAACAGTTTTAATGGGTGCATGTTCCATGGCAAACCACTGTATGTTGCTTTTGCTCAGAAGAAAGAGGTTAGGAAAAGATTATTGCAGCTCACACATACTCGTAAACAAGAAGGATTAACTGGACCTTCAACTGCTGTTATCCGTGGTGCACTTCCTCCTTTCATCTACACAGCTACTGGTGTTGTTTATCACCCTTCGGGATCAGGACCGAGTGCTAATGGCTTTGCAGCTCCTTCTAATGCATTTCAAAAATCACCAGCTTCTACTATTTCCATCAATGGTAAGCAGCATTGGATATACATGAGCGGGATGAATGACAATACGAATTCAAAAGAGTCAAGTACTCACTCAGGAAAGGCCAAGTATGTGGCTATTGAATGCCAACAGGAGATGGAAGACAAAGCTGGAACTTCATCTGCTATGCAGGTTCTTGACCTTCAGAAGACCGAAGTTTCTGGCCAGGATGGTGTACTTCATTCAAATTCTATTGCAGCCGAGATTGAGTTTTTGCCTTCTCTTGGGTGTTTCGCTCATGATTGCCGTAACATAGTTGCTAAACTTCCAACTCCTAAACTTCCAAATTTGTTTGTTCCCAATCATGGTGACCACACTCCTATTGTTGCTACTATCTCTCGAAGAGTTACAGCTATAGATAATCAAATGCTCATCGCTCCTTTTACCGAAGAAGAGTTCCGTCAAGCAGTTTTTTCTATGCATCCAGATAAATCTCCAGGTCCTGACGGCCTTAACCCGGGATTCTACCGCAAATTTTGGCCCCTCTTCGGAAGAGAAAATTTTGAAGCTTGCTGCTCTTGGCTCGAAGATGGGCAATTCCCACCTAATATCAATGATACAAATATTGCACTAGTGGCGAAAGTTGACCGTCCCGAAAGCATGAAAGATCTTCGTCCTATATCTCTTTGCAATGTTGTCTACAAAATTCTCTCAAAGGTTCTAGCTAACCGTCTCAAATGTATCCTTCCTACTTGTATTTCTGATTCACAAGTTGCATTTGTACCGGGAAGAGATATTCTAGATAATGCATTAACAGCCTTTGAAGTTCTCCATTATATGAAGTGTAAAAGTCGTGGCAAAGAGGGAGTTATTGCTTTAAAGTTAGATGTCAGCAAAGCTTTTGATCGTGTCAAATGGAGTTATTTACAAGCGGTGATGCAAAAGATGGGTTTTTTAGATACATGA 2256 0.4056 MADSEKETAKPASIYVGDLHSDVTDALLYKAFSEFKSITSVRVCRDSATGKSRCYGYVNFTSHQEAIRAIELKNHSILNGKVIRVMWSSRDADARKSGRGNVFVKNLAESIDNVGLHDLFQKYGNILSSKIVMSEDGKSKGYGYIQFDSEESANEAIQKMNGSTVKDKQIYVGKFIRKSERSFPDPDAKDTNLYVKNLDPDITKEHLQEKFSSFGKISSLAIAKDGNGLSKGFGFVNYDNPDDARRAMEAMNGSQFVGSKNLYVARAQKKAEREEILLHLFVEKCKEQNLKYKGSNIYVKNIADSVSDEELRDLFSACGTILSAKIMRDDKGISKGFGFVCFSTLDEAVKSVNSFNGCMFHGKPLYVAFAQKKEVRKRLLQLTHTRKQEGLTGPSTAVIRGALPPFIYTATGVVYHPSGSGPSANGFAAPSNAFQKSPASTISINGKQHWIYMSGMNDNTNSKESSTHSGKAKYVAIECQQEMEDKAGTSSAMQVLDLQKTEVSGQDGVLHSNSIAAEIEFLPSLGCFAHDCRNIVAKLPTPKLPNLFVPNHGDHTPIVATISRRVTAIDNQMLIAPFTEEEFRQAVFSMHPDKSPGPDGLNPGFYRKFWPLFGRENFEACCSWLEDGQFPPNINDTNIALVAKVDRPESMKDLRPISLCNVVYKILSKVLANRLKCILPTCISDSQVAFVPGRDILDNALTAFEVLHYMKCKSRGKEGVIALKLDVSKAFDRVKWSYLQAVMQKMGFLDT 751
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g02307 751 SMART rrm1_1 296 368 IPR000504 GO:0003723
Tsu01g02307 751 SMART rrm1_1 101 173 IPR000504 GO:0003723
Tsu01g02307 751 SMART rrm1_1 192 265 IPR000504 GO:0003723
Tsu01g02307 751 SMART rrm1_1 13 86 IPR000504 GO:0003723
Tsu01g02307 751 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 191 269 IPR000504 GO:0003723
Tsu01g02307 751 PANTHER POLYADENYLATE-BINDING PROTEIN 6 467 - -
Tsu01g02307 751 SUPERFAMILY DNA/RNA polymerases 581 747 IPR043502 -
Tsu01g02307 751 CDD RRM1_I_PABPs 13 91 - -
Tsu01g02307 751 Gene3D - 101 180 IPR012677 -
Tsu01g02307 751 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 100 177 IPR000504 GO:0003723
Tsu01g02307 751 Gene3D - 282 381 IPR012677 -
Tsu01g02307 751 Gene3D - 181 276 IPR012677 -
Tsu01g02307 751 CDD RT_nLTR_like 636 747 - -
Tsu01g02307 751 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 12 90 IPR000504 GO:0003723
Tsu01g02307 751 SUPERFAMILY RNA-binding domain, RBD 292 379 IPR035979 GO:0003676
Tsu01g02307 751 TIGRFAM PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family 12 489 IPR006515 GO:0003723
Tsu01g02307 751 CDD RRM2_I_PABPs 98 174 IPR045305 -
Tsu01g02307 751 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 295 372 IPR000504 GO:0003723
Tsu01g02307 751 Pfam Reverse transcriptase (RNA-dependent DNA polymerase) 651 749 IPR000477 -
Tsu01g02307 751 Gene3D - 1 100 IPR012677 -
Tsu01g02307 751 SUPERFAMILY RNA-binding domain, RBD 179 274 IPR035979 GO:0003676
Tsu01g02307 751 SMART rrm2_1 296 368 IPR003954 GO:0003676
Tsu01g02307 751 SMART rrm2_1 101 173 IPR003954 GO:0003676
Tsu01g02307 751 SMART rrm2_1 192 264 IPR003954 GO:0003676
Tsu01g02307 751 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 102 170 IPR000504 GO:0003723
Tsu01g02307 751 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 193 260 IPR000504 GO:0003723
Tsu01g02307 751 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 297 365 IPR000504 GO:0003723
Tsu01g02307 751 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 14 84 IPR000504 GO:0003723
Tsu01g02307 751 SUPERFAMILY RNA-binding domain, RBD 12 180 IPR035979 GO:0003676
Tsu01g02307 751 PANTHER RNA BINDING PROTEIN 6 467 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g02307 Tsu-Chr1 24547591 24553302 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g02307 12 416 Eukaryotic Initiation Factors Gene Family AT2G36660 58.578 2.23e-163 484
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g02307 K13126 - gmx:100804671 627.861
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g02307 01 24547591 24553302 Tsu01g02307 01 24547591 24553302 ECH