Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g02290 ATGGGTGATAACCGCGAACACGAGAACACCGAAAGCAGTGATTTCACCTCCGAAGATGAAGGAACCGAAGATTACCGACGCGGTGGTTACCACGCCGTCCGAATCGGCGACACTTTCAACTCCGGTCGTTATGTCGTTCAGAGCAAGCTTGGTTGGGGTCATTTCTCCACTGTCTGGCTCGCTTGGGATACACTTCATTCTAGATACGTGGCTTTGAAAGTTCAAAAGAGTGCTCAGCATTACACCGAGGCTGCCTTGGATGAGATAACGATATTGCAACAGATTGCGGAGGGAGACACCGATGATAAAAAATGTGTGGTCAAGCTTTTGGACCATTTCAAGCATTCTGGTCCAAATGGACAGCATGTTTGTATGGTTTTTGAGTACCTTGGGGATAACCTTTTAACTCTTATTAAGTATAGTGATTATCGTGGAATGTCTATCAACATGGTTAAAGAGATATGCTTTCATATTTTGGTTGGATTGGATTACTTACATAAGCAACTTTCTATCATACACACTGACTTGAAACCCGAAAATATCCTTCTCTTATCAACAATTGATCCGTCTAAGGATCCTAGAAAATCTGGTGCTCCTCTTATTCTTCCTAATAGTAAAGACAAGACCATGTTGGAGTCAACGACTGCAAAAGACACAAAAACATCAAAtggagatttgattaagaatcataagaaaaatattaagagAAAAGCCAAGCAAGCAGCTCATGGATGTGCTGAGAAGGAGGCATCTGAAGTAGCTGATGGTAATCATGAAACCTCTGGTGCTGTAGAATCATCTCCGAATGCAAGTTCTGCACGAGAACAAGCTTCTAGTTCTGCTGGTACTAGCAGGTTATCGGATGCTGATGGAACAAAGCTAAAAGAGCAGGGCAACAGAAGAGGAAGCCGCACTGTGAGACAGAAACTGCTTGCCTCAGTTGATGTCAAGTGCAAGTTAGTTGACTTTGGTAATGCTTGCTGGACATATAAACAGTTTACAAATGACATTCAGACAAGACAATATCGGTGCCCAGAGGTTATCCTTGGATCAAAATATTCTACATCTGCAGATCTTTGGTCGTTTGCTTGCATATGTTTTGAGCTGGCAACCGGAGACGTGTTATTTGATCCTCATAGTGGTGATAACTTTGATAGGGATGAGGACCACTTAGCATTAATGATGGAACTTCTTGGAATGATGCCACGTAAGATTGCACTAGGGGGGCGTTATTCCCGGGATTTCTTCAATAGGTATGGTGATTTGAGACACATCCGTCGGTTGCGATTCTGGCCATTGAATAAAGTGCTCATGGAGAAGTACGATTTTAGTGAGAAAGATGCAAGTGACATGAGTGAATTTTTGGTTTCTATCCTTGACTTTGTTCCTGAGAAAAGACCTACAGCCGGTCAGTGCCTGCTACATCCATGGATGAATGCAGGTCCTCGTCTTTTGGAGCCATCGTTGCCTTCTTCTAATCACAACCCTGCTGGTGAAACTGCTACTTCTGACCAGAAGAATAAGGACAAAGATGAGAGGGAGGCCATGGAGGCTGGAATTGGAAATATCGCCATCAATTCAGATGCTAAACCACTCATGCATTCTCCATCCAAGAAAGCCTTCCAAGGCAGCCGCAAGTAG 1641 0.4278 MGDNREHENTESSDFTSEDEGTEDYRRGGYHAVRIGDTFNSGRYVVQSKLGWGHFSTVWLAWDTLHSRYVALKVQKSAQHYTEAALDEITILQQIAEGDTDDKKCVVKLLDHFKHSGPNGQHVCMVFEYLGDNLLTLIKYSDYRGMSINMVKEICFHILVGLDYLHKQLSIIHTDLKPENILLLSTIDPSKDPRKSGAPLILPNSKDKTMLESTTAKDTKTSNGDLIKNHKKNIKRKAKQAAHGCAEKEASEVADGNHETSGAVESSPNASSAREQASSSAGTSRLSDADGTKLKEQGNRRGSRTVRQKLLASVDVKCKLVDFGNACWTYKQFTNDIQTRQYRCPEVILGSKYSTSADLWSFACICFELATGDVLFDPHSGDNFDRDEDHLALMMELLGMMPRKIALGGRYSRDFFNRYGDLRHIRRLRFWPLNKVLMEKYDFSEKDASDMSEFLVSILDFVPEKRPTAGQCLLHPWMNAGPRLLEPSLPSSNHNPAGETATSDQKNKDKDEREAMEAGIGNIAINSDAKPLMHSPSKKAFQGSRK 546
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g02290 546 MobiDBLite consensus disorder prediction 207 222 - -
Tsu01g02290 546 MobiDBLite consensus disorder prediction 503 517 - -
Tsu01g02290 546 ProSitePatterns Protein kinases ATP-binding region signature. 50 73 IPR017441 GO:0005524
Tsu01g02290 546 CDD STKc_SRPK 33 478 - -
Tsu01g02290 546 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 11 541 - -
Tsu01g02290 546 MobiDBLite consensus disorder prediction 484 546 - -
Tsu01g02290 546 MobiDBLite consensus disorder prediction 240 255 - -
Tsu01g02290 546 Pfam Protein kinase domain 311 478 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu01g02290 546 Pfam Protein kinase domain 44 184 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu01g02290 546 MobiDBLite consensus disorder prediction 192 305 - -
Tsu01g02290 546 MobiDBLite consensus disorder prediction 260 287 - -
Tsu01g02290 546 PANTHER SERINE KINASE-LIKE PROTEIN 11 541 - -
Tsu01g02290 546 MobiDBLite consensus disorder prediction 289 303 - -
Tsu01g02290 546 MobiDBLite consensus disorder prediction 486 502 - -
Tsu01g02290 546 ProSitePatterns Serine/Threonine protein kinases active-site signature. 171 183 IPR008271 GO:0004672|GO:0006468
Tsu01g02290 546 Gene3D Phosphorylase Kinase; domain 1 20 126 - -
Tsu01g02290 546 SUPERFAMILY Protein kinase-like (PK-like) 39 490 IPR011009 -
Tsu01g02290 546 Gene3D Transferase(Phosphotransferase) domain 1 127 479 - -
Tsu01g02290 546 SMART serkin_6 44 478 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu01g02290 546 ProSiteProfiles Protein kinase domain profile. 44 478 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu01g02290 546 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g02290 Tsu-Chr1 24283767 24289911 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g02290 10 526 EF-hand Containing Proteins AT5G22840 70.192 0.0 755
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_SRPK Tsu01g02290 Pkinase 5.3e-20 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g02290 K08832 - gmx:100810777 986.097
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g02290 01 24283767 24289911 Tsu01g02290 01 24283767 24289911 ECH