Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g02287 ATGGTTCTCAAGACCGAATTGTGCCGTTTCAGTGGTGCCAAGATCTATCCTGGGAGAGGAATCAGATTTATTCGTAGTGATTCTCAGGTTTTCCTGTTTGTCAACTCGAAATGCAAAAGGTATTTCCACAACAAGTTGAAGCCCTCTAAGCTTACATGGACTGCCATGTATAGAAAGCAACATAAGaagGACATTGCCCAAGAAGCTGTGAAGAAGAGGCGTAGAGCTACCAAGAAACCTTACTCAAGGTCTATTGTTGGTGCTACTTTGGAAGTTATCCAGAAGAAAAGATCGGAGAAGCCAGAGGTTCGGGATGCTGCCAGAGAAGCTGCACTTCGTGAAATTAAAGAGAGGGTCAAGAAAACCAAGGATGAGAAGAAGGCGAAGAAGGCAGAAAGTCAGGCTAAGGCACAAAAGAATGTAGGAAAAGGAAATGTTTCAAAGGGTGGTGCATCAAAAGGTCCTAAGCTTGGTGGTGGAGGCGGGAAGCGCTGA 495 0.4485 MVLKTELCRFSGAKIYPGRGIRFIRSDSQVFLFVNSKCKRYFHNKLKPSKLTWTAMYRKQHKKDIAQEAVKKRRRATKKPYSRSIVGATLEVIQKKRSEKPEVRDAAREAALREIKERVKKTKDEKKAKKAESQAKAQKNVGKGNVSKGGASKGPKLGGGGGKR 164
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g02287 164 MobiDBLite consensus disorder prediction 114 136 - -
Tsu01g02287 164 Coils Coil 112 136 - -
Tsu01g02287 164 CDD Ribosomal_L24e_L24 3 56 IPR000988 -
Tsu01g02287 164 ProSitePatterns Ribosomal protein L24e signature. 10 27 IPR023442 -
Tsu01g02287 164 PANTHER 60S RIBOSOMAL PROTEIN L24 1 164 - -
Tsu01g02287 164 Gene3D Ribosomal protein L24e 3 64 IPR038630 -
Tsu01g02287 164 Pfam Ribosomal protein L24e 4 67 IPR000988 -
Tsu01g02287 164 Gene3D - 69 140 - -
Tsu01g02287 164 PANTHER 60S RIBOSOMAL PROTEIN L24 1 164 IPR000988 -
Tsu01g02287 164 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 6 58 - -
Tsu01g02287 164 MobiDBLite consensus disorder prediction 114 164 - -
Tsu01g02287 164 SMART 4TRASH 8 46 IPR011017 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g02287 Tsu-Chr1 24245339 24247307 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g02287 1 157 Cytoplasmic Ribosomal Protein Gene Family AT2G36620 85.350 2.58e-87 251
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g02287 K02896 - csv:101206866 236.113
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g02287 01 24245339 24247307 Tsu01g02287 01 24245339 24247307 ECH