Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g02286 ATGGAGTGGAATGGGAACCATAGAAGCTTTGTTCCTCAACCAGAGTCTTCCTTAAGCTTCCTCTACAACTACAATCAAACCCCATATCAAGGAATGGTGGAAGTGAAACAGCAAGAATGGACTGAAACTTTCCcagaaatggaaaaaatgatGAACTACAAGAAtcaggaaaagaaaaagagattaaCTAGTGAACAGATGGAATCACTGGAGAGTAGTTTCCAGGAGGAGATAAAATTAGATCCTCAAAGAAAGATGAAGCTTTCCAAAGAGTTAGGGTTACAGCCTCGCCAAATTGCTGTTTGGTTTCAGAATAGGCGTGCAAGATGGAAGACCAAGCAACTTGAACACCTTTATGATTCACTTAAACACCAATTTAATGTTGTGTCCAAGGAAAAACAGCAGCTTCAGGATGAGGTAATGAAGTTGAAGGCTATGTTGAAAGAGCAAGGTTGTTCTTCTAGTAGAATGCAATGTTACTATTCAGAAATGTCAGGGGAAGAAACAGAAACAGTTGAAAGCACATCAGAGGCAGCTCTACTTTGCTCCAATATGGAGATTAAGGGAAAGAATCATAATCAGTTCAACATTGCAGAGGGAAACTGTTTTAATTTGGAGGGTTATAACTTTAACAACAGTGTTCCACTTTTACCCTACTGGCCTAATGTTCCTCATAACTATCAACCATAA 690 0.3725 MEWNGNHRSFVPQPESSLSFLYNYNQTPYQGMVEVKQQEWTETFPEMEKMMNYKNQEKKKRLTSEQMESLESSFQEEIKLDPQRKMKLSKELGLQPRQIAVWFQNRRARWKTKQLEHLYDSLKHQFNVVSKEKQQLQDEVMKLKAMLKEQGCSSSRMQCYYSEMSGEETETVESTSEAALLCSNMEIKGKNHNQFNIAEGNCFNLEGYNFNNSVPLLPYWPNVPHNYQP 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g02286 229 Coils Coil 53 73 - -
Tsu01g02286 229 Pfam Homeodomain 58 111 IPR001356 GO:0003677
Tsu01g02286 229 PRINTS Lambda-repressor HTH signature 93 109 IPR000047 GO:0003677
Tsu01g02286 229 PRINTS Lambda-repressor HTH signature 84 93 IPR000047 GO:0003677
Tsu01g02286 229 ProSiteProfiles 'Homeobox' domain profile. 53 113 IPR001356 GO:0003677
Tsu01g02286 229 PANTHER HOMEOBOX LEUCINE ZIPPER PROTEIN 1 221 - -
Tsu01g02286 229 Gene3D - 49 122 - -
Tsu01g02286 229 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 1 221 IPR045224 GO:0003700
Tsu01g02286 229 Coils Coil 119 146 - -
Tsu01g02286 229 ProSitePatterns 'Homeobox' domain signature. 88 111 IPR017970 GO:0000981|GO:0006355
Tsu01g02286 229 SUPERFAMILY Homeodomain-like 56 122 IPR009057 -
Tsu01g02286 229 SMART HOX_1 56 117 IPR001356 GO:0003677
Tsu01g02286 229 CDD homeodomain 58 114 IPR001356 GO:0003677
Tsu01g02286 229 Pfam Homeobox associated leucine zipper 113 147 IPR003106 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g02286 Tsu-Chr1 24241532 24243879 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g02286 1 143 Homeobox Transcription Factor Family AT5G03790 54.938 1.08e-44 146
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Tsu01g02286 Homeodomain 4.9e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g02286 - - gmx:100778007 276.944
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g02286 01 24241532 24243879 Tsu01g02286 01 24241532 24243879 ECH